DreINT0083745 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21294998-21295646:+
Coord C1 exon
chr8:21294998-21295160
Coord A exon
chr8:21295161-21295503
Coord C2 exon
chr8:21295504-21295646
Length
343 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
TAATAATAATTTTCCTTCAGGTG
3' ss Score
8.21
Exon sequences
Seq C1 exon
AACTCCTTCTACAAACTCATGATGGGAGACAACAAGTCTGAGAAGTTTTTTAAAGTGCTGAATGACCGCATGAAGAACGCACAGCTTGACATCAAATCCACCGTCTCTGTCAATGTGGGGGAAATGAGCAACAAAGCCAAAGATGACAAAGATCTGGAGACTG
Seq A exon
GTAATGCAACCCCACACTTGCTTCCTCTGTAAGGGACACTCCACTTTTTTTGAAAATAGACTCAATTTGCAGGTTGAGTTTAACCATTTTTAAATCCCTTTAAACTGATCTCCAGGTCTGGCAGGGATACTTTTAGCTTAGCTTAGCATAGATCATTGAATCAGATTAGACCATTAGCAGCCCATTCAAAAATGTCGAAAGGGTTCAATAATTTCCCATTTAAAGTTTGACACTTCTATAGTTAAATCGTGTACTAAAAACAATAATGAACAGTTGTTATTTTCTAGACTGATACATGTAGGAACTTTACTCTCATTCTAGCGTAATAATAATTTTCCTTCAG
Seq C2 exon
GTGGCGTATCGTCGTTTGGCCAGCCTGAGCCTCAACCTGAACAACAGGAAGTGGAAACAGAAATGGGGCCATCTGTCACCATCATGAAACCCATCCTGCGCTTTCTACAGCTGCTCTGTGAGAACCACAATCAGGACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=NA C2=0.479
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=60.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCTACAAACTCATGATGGG
R:
AAGGTCCTGATTGTGGTTCTCAC
Band lengths:
302-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]