GgaINT1015714 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4571321-4571761:-
Coord C1 exon
chr26:4571587-4571761
Coord A exon
chr26:4571506-4571586
Coord C2 exon
chr26:4571321-4571505
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGGGGTTGGGTTGCCCATAGGAC
3' ss Score
6.91
Exon sequences
Seq C1 exon
AAATCATTTTACAACCTGATGACGAGCGACAAGAAGTCCGAGAAGTTCTTCAAAGTTTTGCACGACCGGATGAAGAAAGCTCAGCAAGAGACCAAGTCGACGGTGTCTGTGAACATGAGTGACATTGGGAACAAACCTCGTGAGGACAAAGATGAGCCTGACCCTGGCACCAAAG
Seq A exon
GTATGGGGCCGTGTCCTCCCAGAAAGGCCAATGCCTGCCTCGTAGGACAGCCTGATGCTAATGGGGTTGGGTTGCCCATAG
Seq C2 exon
GACGAGGAGAGACCTTCATGATGCCCGGCACCCCCTCCCGATACCCGCTGGCCTTGGGGTTTCGGAAGGGCCATGATACCGGGGAGCAGGGGCAGAACAATGAGATGGGGGTGACGGTCCTGATTATGGAGCCCATCCTGCGATTCCTCCAACTGCTGTGTGAGAACCACAACCGAGACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.8=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGATGAGCCTGACCCTGG
R:
CGCAGGATGGGCTCCATAATC
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]