RnoINT0076761 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5703260-5703707:+
Coord C1 exon
chr20:5703260-5703434
Coord A exon
chr20:5703435-5703525
Coord C2 exon
chr20:5703526-5703707
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
3' ss Seq
TATCAAGGCCCGCCCCACAGGTC
3' ss Score
6.23
Exon sequences
Seq C1 exon
AAGTCTTTCTACAACCTGATGACAAGTGACAAGAAGTCAGAGCGCTTCTTCAAAGTGCTGCATGACCGCATGAAGCGTGCCCAGCAGGAGACCAAGTCCACAGTTGCCGTCAACATGAGTGACCTGGGCAGCCAGCCTCGTGAGGACCGTGAGCCAGCAGACCCTACCACCAAAG
Seq A exon
GTGGAGCTCCGGGCAGACATGGGGTGTGGGGTCTATCATGGGTGGGGAGAGGCTTCCCATAGCCCCAGTCTTATCAAGGCCCGCCCCACAG
Seq C2 exon
GTCGCGTGTCCTCCTTCTCCATGCCCAGCTCCTCCCGATATTCGCTGGGCCCTGGCTTGCACCGGGGGCACGACGTGAGCGAGCGTGCGCAGAACAACGAGATGGGGACCTCGGTGCTCATCATGCGGCCCATCCTGCGCTTCCTGCAGCTGCTGTGTGAGAACCATAACCGGGACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.8=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAACATGAGTGACCTGGG
R:
AGGTCCCCATCTCGTTGTTCT
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]