BtaINT0078600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7749048-7749588:+
Coord C1 exon
chr23:7749048-7749240
Coord A exon
chr23:7749241-7749462
Coord C2 exon
chr23:7749463-7749588
Length
222 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
3' ss Seq
CCCACCCCCGCCTCTCCCAGGCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATCGTGCGGCAGGACCGCAGCATGGAGCAGATCGTGTTCCCCGTGCCCGGCATCTGCCAGTTCCTGACGGAGGAGACCAAGCACCGTCTCTTCACCACCACCGAGCAGGATGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCAAGCTCCGCA
Seq A exon
GTGAGGACCCGCGGGTGGGCGGGTGGGATGAACTGGGCTGGAGCTGCTCACTGATGCCCCTGACGCCTCCCTCACCTGGTGGTGAGGGCCCCGCCGCCACCCCAAGGAGGGAGCCAATCATGTTTTGCTCCTGAATTGTGGCTTGAGGCTGGTGGCCCCCCGCATGGGGTGGGCAGATGATATTAACCAAGGACCCCCCTGACCCACCCCCGCCTCTCCCAG
Seq C2 exon
GCATGCCACTCATCTACTGGTTCTCCCGCCGCATGACTCTCTGGGGCAGCATCTCCTTCAACCTGGCAGTCTTTATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAGGGCGCGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(8.9=65.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCGCAGCATGGAG
R:
CCCTCCACGTAGGGGTAGAAG
Band lengths:
299-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]