RnoINT0076769 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5705692-5706098:+
Coord C1 exon
chr20:5705692-5705884
Coord A exon
chr20:5705885-5705972
Coord C2 exon
chr20:5705973-5706098
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
3' ss Seq
ACGCCACGCTGTGTCCTTAGGCA
3' ss Score
8.26
Exon sequences
Seq C1 exon
ATTGTGCGGCAAGACCGAAGCATGGAGCAGATCGTGTTCCCGGTACCTGCCATCTGCCAGTTCCTGACAGAGGAGACCAAGCACCGGCTCTTCACCACCACGGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCCGGCTTCGCA
Seq A exon
GTGAGGACCAGCGGGTGCCTCCTCCCCTTCCTGGGGCTCCCCCGGGCAGAGGGGTTGTGGGGACCCACACGCCACGCTGTGTCCTTAG
Seq C2 exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGTAGCATCTCCTTCAACCTGGCAGTGTTCATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAAGGCGCGTCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGCCATCTGCCAGTTC
R:
AGAACCAGTAGATGAGCGGCA
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]