Special

GgaINT0141550 @ galGal4

Intron Retention

Gene
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4567007-4568178:-
Coord C1 exon
chr26:4567986-4568178
Coord A exon
chr26:4567133-4567985
Coord C2 exon
chr26:4567007-4567132
Length
853 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
TCTGCCTCCTCTCCCCGCAGGCA
3' ss Score
14.32
Exon sequences
Seq C1 exon
ATTGTGCGCCTGGACCGCAGCATGGAGCAGATAATCTTCCCAGTGCCTGGCATCTGCGAGTTCCTCACCAAGGAGACCAAGTACCGACTCTTCACCACGACGGAGCAGGATGAGCAGGGCAGCAAAGTCAGTGATTTCTTCGACCAGTCGTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAACTGCGCA
Seq A exon
GTAAGAGCGAGCCAGACCTTCCCTTTGCAGCAGAGCAGCTGTGAGCCGGGCAGCCGTGCTTTGAGGGGGCTGTGACCCCCAGTGGCAGCCTGGAAATCTCCCTGTGCCCCTGGGAGGTGTATTTTCTCCACACCTGTTAGTGCAATTCCTCATAGCCTGAGAACATCTTCTGACACATTCCACACCTGCAGCTGTGCTCACTTAGGGAGCCCTCTCTTTGTTTGCTTTCAGTTGGCTTCTCCCAAGCCAGCATCTAGCAGCTACATTTTGTTGATAAAGCTGCTTTCTCTGCACCATGCAGATCTCTTTAGGTGCTTTCAGGGCTGCACGGGGACGAACTTCCTGGCTTAAAATAACAGGAGCTCAGTCAACAGTTAGGAGGCACACTATAAATACTGTGTTGTGGCTCAGAGGTAGCACGGCAGCACTGAAAACACTTGCAGATCCAGTCAAAACTATCTTAGGAATTCAGCAGGAAGCAGGTTTCCAGTATGGATGGGAAATTGCTGGCTGTGTCTCCTCTGGGACAGAGAATCAGGCTGCAAACACAAAGGCACTGTTGTTAGGAAGGGCGTGAGGATGTAAGAGGTGGGAGACAGTGAGGAGGGTGAGGTGATGAGTGAAGCCAATCTGATTGCCAGGGGAGGTCAAAGGGCCCAGAAACCACAAAATGTGAGCAGAGACATTTTGAACTTGCGTTCCTGTTACAAGAGATGAAGAGGGAGCTTTTATCAATGGCATGAAGCGAGGTCTCACTGGCTGTGCTGAGCTCAGTTTGGGTGCCTGGGAGGTCACAGCCTTCCCTGCTGGCACCAGGTTGGCTGAGATGTGTGTCTGCCTCCTCTCCCCGCAG
Seq C2 exon
GCATGCCGCTGATGTACTGGTTCTCCCGCAGAATGACTCTCTGGGGAAGCATTTCCTTCAACCTGGCTGTCTTCATCAACATAATCATTGCTTTCTTCTACCCTTATGTTGAGGCCACTTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCGCAGCATGGAG
R:
CCATGGAAGTGGCCTCAACAT
Band lengths:
310-1163
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]