MmuINT0084576 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27115886-27116297:+
Coord C1 exon
chr17:27115886-27116078
Coord A exon
chr17:27116079-27116171
Coord C2 exon
chr17:27116172-27116297
Length
93 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
3' ss Seq
CACTCTGTGTCCCCACCCAGGCA
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATTGTGCGGCAAGACCGAAGCATGGAGCAGATCGTGTTCCCGGTACCTGCCATCTGCCAGTTCCTGACAGAGGAGACGAAGCACCGGCTCTTCACCACCACTGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCCGGCTTCGCA
Seq A exon
GTGAGGACCAGCGGGCGCCTCCTCCCCTTCCTGGGCTCCCCTGGGCAGAGGGTTCGTCAGGGACCCCTCATGCCACTCTGTGTCCCCACCCAG
Seq C2 exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGCAGCATCTCCTTCAACCTGGCTGTGTTCATCAATATCATCATTGCCTTCTTCTACCCCTATGTGGAGGGCGCTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(9.6=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGCCATCTGCCAGTTC
R:
AGAACCAGTAGATGAGCGGCA
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types