BtaINT0079602 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48490643-48491767:+
Coord C1 exon
chr19:48490643-48490718
Coord A exon
chr19:48490719-48491536
Coord C2 exon
chr19:48491537-48491767
Length
818 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GCTCCCACCTCCCGCCCCAGGTC
3' ss Score
7.72
Exon sequences
Seq C1 exon
ATGCCGGTCCGCAGGGGCCACGTCGCACCCCAAAACACTTACCTGGACACCATCATCCGCAAGTTCGAGGGCCAGA
Seq A exon
GTGAGTGTGTGCGGTGGGTTGGGGCATGATCTGGAGCCCTGGTTCGGTGGCAGGAGTGGCCGGACCCTTTACTAACTTCGAATGGAGCAGGGTGGGGGGTGTCTGATATGCCAAACGCATATCCTTCCCTTCAATGTCCGAGAAACACCTTTTCCTCCAGCGAGCCCCTACTTTTACCTCCAACACCACCCTCCCTTCTGCTACATGGTGGGCAAAGTGCAGCTCCCCGCTTCACCTGAGTTGTTTTCTTGCCGGTTCTAAGCCCTGACCTCCCCTTGTATCCCTGCCATGCTTCCCTCCTGACTCCCCCACCCCACCCCCAACTTCCTCCAGAGGTTTCCTTTTCGCCCTCCTTTTCACCTCCTGACCGAGCCACTCTGGTCTTTCTAGGAGCTCACCCAGGCTGGGCCCCCATCTGGTCACACCCCTGCTCCCTCTCACCTATCCCTTTCCCTGCTCCAGGAAGCCTTGGGCCTCTCTCCCACTTCACTGACCCCATTACTGCCCTGGTCTTCCCACAATTCCCAGGCCTGACTCTCCTTCCCCTTCTCTGGTCATCGTCCTGCTTCCCCCTCCTGACCATCCCCTCATTACTCCCAGGAGCCCCATGGCCTTCCCCCATGACTCTGGCCTTCTTGGTCTTCCCACCCTCCCCAGACCTGACCTTCCCCTTCCTTCATTTTGATCACAGCTCTGCTCTGCATCCAGATCCAATCCCCCCCACGCACACACACACCAACCACTCCCACAAGTCCCTCTGATCTTTCCCTCCCTACTGCCTGGTCCTGGTTGCCATGGGCTCCCACCTCCCGCCCCAG
Seq C2 exon
GTCGTAAGTTCCTGATCGCCAACGCTCAGATGGAGAACTGTGCCATCATTTACTGCAACGATGGCTTCTGCGAACTCTTCGGCTACTCCCGAGTGGAAGTGATGCAGAGACCGTGCACCTGCGACTTCCTCACAGGCCCCAACACCCCTCGCAGTGCCATGTCCCGCCTGGCGCAGGCCCTGCTGGGGGCCGAGGAGTGCAAGGTGGACATCCTCTACTACCGCAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGCACCCCAAAACACTTA
R:
CATCCTTGCGGTAGTAGAGGA
Band lengths:
287-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development