HsaINT0084360 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63523361-63524369:+
Coord C1 exon
chr17:63523361-63523489
Coord A exon
chr17:63523490-63524138
Coord C2 exon
chr17:63524139-63524369
Length
649 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTCCCACCTCCCACCCCAGGTC
3' ss Score
9.23
Exon sequences
Seq C1 exon
GACGCCGGGAGCCAGTGGCGCCTGTGGCTCCGGGCAGGGGCCGCGGCCGAAAGATGCCGGTCCGCAGGGGCCACGTCGCTCCCCAAAACACTTACCTGGACACCATCATCCGCAAGTTCGAGGGCCAAA
Seq A exon
GTGAGTGTGTGTATGTTGGGGCGGGGGGACGATCTGGAGTCCTGGTTCCGTGAAAGGGGGGGCTGGACCCCTTTACTAACTTCTAACCGGGCAAGGTGGTGAGTGCCGGGTGCTGAATGAAAAATCCTTCTTTTGATGTCCCCAACACCTTCTCCTCCAGGGGGACCCGCTTGCCTTAAATGCTGTCCTCTTTTCTGGAACACAAGGAGCAGCGTGCAGGCCTTCCCTCCCTACTGCCAGCTGTTTCCTTGGTGCCCCAAGTTCGAACCTCCCCTTCCAGCCACTGCCTGCCCCCTCATCCGCGTCCTCCAGAGGCTTCTCTGAGTCCTTCTTTTCCTTCCTTTTCATATCCTGGTTCTGGTCTTCCCAGGAGCTTTCCCAGGCCTGACCCCCATCTGGTCACATCCCTGCCTCCCTTCCCCACACTTTTCCTGTTTCCAGGAGGCCTTGGGCCTTCCTTCCACCTCAAGACCCTCACTGCCCTAGTCTTCCCACAATCCCCAGGCCTGACTCCCTCCCTCATTCCGGTCACTGCCCTGCTCCTCTGCCTAAATTCCCCTTACTGCCACCAAGAGTCCTTATGATCTTTCCCTCCCAGCCGCTGGATCCTGGCTCCCATGGACTTTTTGCCTCCCACCTCCCACCCCAG
Seq C2 exon
GTCGGAAGTTCCTGATTGCCAATGCTCAGATGGAGAACTGCGCCATCATTTACTGCAACGACGGCTTCTGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGCAGCAACCCTGCACCTGCGACTTCCTCACAGGCCCCAACACACCAAGCAGCGCCGTGTCCCGCCTAGCGCAGGCCCTGCTGGGGGCTGAGGAGTGCAAGGTGGACATCCTCTACTACCGCAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131881=PAS_8=FE(65.3=100),PF082777=PAN_3=PU(85.7=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGATGCCGGTCCGCAG
R:
TCCTTGCGGTAGTAGAGGATGT
Band lengths:
310-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development