GgaINT0049685 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:22336438-22342346:+
Coord C1 exon
chr7:22336438-22336703
Coord A exon
chr7:22336704-22342133
Coord C2 exon
chr7:22342134-22342346
Length
5430 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATAACTTTCTTTTATTGCAGATA
3' ss Score
10.39
Exon sequences
Seq C1 exon
ACTGGGGGATGGATCTGACTCCGATAGGAAAAGCGTGTGTCTAGAAGTGGTGCTAATGGGAAGAGATTTCCGAGCTCCAGAGGACGATGGTTTCTCACAAAGGGTAGCTGGCTCGGTGCTCGGGGCTGCAACCGTGTAGGAGATCCTTGGAGAAGTCCTTGTGCACAGAAAGCCGAAGATCTGTACAAACATGCCTGTTCGCAGAGGCCATGTGGCACCACAAAACACATTTTTGGGTACAATCATACGAAAATTTGAAGGGCAAA
Seq A exon
GTAAGTTCTCTCTTTCTATCTATTTTGCTACAGTAGTTTCTGCTTGTGACTAAACGGACAGCAGCTCTGGACTATTTTAAGTTTGTCGCTTGGAAAGAAAACCCCAGAGGTGAGGAGGTTACTCCCTCGCAGGAGTAACGCTGTTTTTGATCTAGAATGCAGATTACTGACTTGAATTATTGTGTTGTCGTTTTTTTTTTTTTTCTCTCCCGTTTCTATTAACAGTTTTTATTTTTGATTGCATCTGTAATGTGTAACTACAGAAGTTATATCTTACCATTTTCTGAACTAGAGAGATGGCTGTAACACAAAGTTTGCAATCTTGCTTGTCTATACAATGCCTGAGAAATTTGGTTAGATTTATTGATTTTATAATTAATAATAGTTATCATTGTCTTTTCAAAACACAGCAGAAGAAGCAGCCTTTGATTTAGAGGAAACAAATAATATGCAAAGGAGCTATTAAATGGAAAATATTCTTACCTTATCATCATGACTGCATTTTAATGTAGCTGTCAGATATTTGCTTTGTTTATGGAAGCCTTAAATATCTATCAGACCAGTGCAAATGCATCCTCAGAGAGTCTATGAGATCTTTTCCAATGCAGCGGTTTGCTACCTGTCAAGGAGGCTGAAGCTGAAGTGGTATTCCTGGCCGGAACTCTGGGTTACTGTTAACAGTAAGAAGGAACACTTGATGCTTAAAATGAATTTCATTTAGAAACGGTAGTTTTATATATGTACATTTATTTAAATATTTAGCATATTTTTAGTATCAGTCTAGTGCAAACTCTTACAGCTAACTCCAGCTTTTGTACTTCCTTATACTTAGACACACATTAGCAATTTAATATTTATGTTATTTGAGAATAAAATAAAGACAGACTTTATAGTCCTAATTTTAAAAAATGCTACGTTAGTGTTGCTACTTGAGACAAGTTTTTATGTTGTAGACTATGTATGTTGAATATAAACCACTGCCAACCAAATAGACAAGTGATAGTGGAAATTCAACATGATTGAAAGACAGTGGAAAAAGCAAAAATGAGATCTCTCCAAATATTTCAGTGTTAAAAGACAAAATATTTTTAGAATTATGAAGACTTGTAGTGCTACCTTGGTATCAAGTCCCCTCTGAAGAGAGGGAACTTCTAGTGTGATTAGAGTAAGCAGAAATTGGCATTATTGACAATAAATGTATCAAAGCAGTACATTTATAATTAAAATAGGAGTAATGTGTTATAGTGGTAAACAGTGACAAATGAAATAACAGTCAAATGACAACTTCTGAACTTTTCTCTGAGGTGAGCATATAAGAAAGTGTGCTGGACTAAGGCACAGAACTTCAGTGGACTGTGAAAAAATGTTTCAAATGCCACAACCTTCGATTTTGATGTGCCTTCAATTTCATGTTCTTGCTAAGGAATATTTTCTTTTATAAGTGTAACTTTAAAACAAGCACAGAAAACAAATTTTTATCATGTTCTTTTCCAGATAGCTTTGCTAAAACAATGACTATAAACTCAACTCAATGAAAATCCCGACTTAGTAGACTCAGGTGGTTGCTCTTCTTCACAGCTCCTCAATTGTGTAGAACCCCCTTCCTTCTCATTTGCAGCCATCCCCCCTGCCCTCCAAAAAAATAAAAAATACTAACTTTTTAATGACTTCTTGTGGAGTCATGGCTGACAGGACAGTGCTCATCACCTTCCTCCTCATCATCTGAGTTTCACTGTAGCTACGAAGGGAAAGAAAATTAAAGTTGAGAAGTTTTGTGAAAAATTGCACAGTCTGGTAGTCTGGTTTTATTTCCTTAAAAGAGAACTATCTTCACTTTTAATGTACTCTAAATTTATTGAAGTTGCTTGAATCCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGATCTGACACTGTGTGTCTGTACACATTTAGCCTGTGTTTGTGCTAACTTGGCATGTGTTAAAAATAATATTGCAAAAGGAGAATGTCATTGCTAACTTTCATAGCCACAAGCCTGGAGCATTGTTTTGAGATCTGGTTGTTGAATAGCACTTCAGACTTCCAAAATACTGAGGGATAGGAAAGGTGCTTAACTAAAGTACTGTTTATCCAACAGTTAACCTTAATATGTGTTTTTCTAAATATGATGAGTCTTGGCATCATACAACACACTATAATATATTTGAGGCAAATCAAAGCAAAACTGTCCACAAAAATTGCTATACACTTTGTAAATATTTTGTTTTTTTTTGAAGTACATTATAAATGGATTATTCACTGTAAACAATCTCATACATAAGAGTCATAAGAGTTTTCAATAACTTCACTTCTGTGAAAAGTTTCTTTAAACTGAAGGATTTAAAGAACGGTATGTTCAACGGCTAGGTAATTTCAAAAAGCTATGGATAATATTTCTAGACACATTCTTGAAAAATTAACTGACCAAAATGTGAAATTCATTTATTGTACACTATATGCTGTGCTAAATTTAAACAAATAGAGATGATTTTTGAACAATTAAATTTCATTTAAAATATTAAGTCACTGATTATAGGTAAAAATTGACAAAATACCAGATAGATCTGGCACTCAAATTCATAACTCCCTGACAGCTTGATCATTTGTATATATAGATTTTTCTGTTTGGTACACATAATGTTCAATTTCTGTAGAAAATGTGAGAAAAAGTTCTGAAGCTGATGTGGTATTATGAAATTTAAATTGCTCGTATGATGGATATAATAAATTTTTGTAAGCATATTCCATAGCTATTATAAATTACCAAAAATATATACTTTGCTTTTCATCTAACATTTGGAAATGTGTTTTATACAGAAAAATATACAGAGTGGTGACAGCTAATAAAGACTTTCCCTCGGTTCTGAAGCAGAACAAATTTAACAAAATTGCTAAACATTTGAGATTTTAGTGCCTGGTTGGTTGCTTATTTTCCATAGTGTGGTGTGAGCGAATATGAAAATATTTTAAGAGCTCAATACCGGCACAGTTAGACATGTAACTTTTTCCACATAAGTAACCCAAGTTCTTTCAGTGAACTGCCCGATGCTTGAAAGTTTGATTTGGCATTACATGCAGATATATTTCATAGCCATCTAGTGTGTAATATTTCAAATACTTAATCATACATATGAAGAAGACAGCTCATGAAGGTGTCAAGTGGCTTAAGGTGGTAACTACTGATGTGTCTGAACGCTTTATTACAAAGTCCTCAATAAACGCGCAGTGAAATGCAAATAAAAGCTTATTTCCTACCACACCATCATTTAGTTTATATAGCAACTCATTATATTAGAATTTTAGTGTTTCCAAGAAATTTTTTAGTATTTCAAATATGAGTGGAATCATATATCCTCACTTTCAAAACTACTATCATTAGAAGTCCAACAAGCAGAGATCAAAAAGAGAATCATTATATAACTAATTATTTTCCTTTTAAATTCTAAATACCACCTCATATTGTTTTAAAATTATTCAGCTTTAAACTTCAACCAAAAAAGGATCTTCTTTTATCAGAAAAACATTATTTCATAGATATGGGGAGTTAGGATTCTAACATTCTCTACTGTCCATAGCCTACTTCAAATTGAAAAAAAGTGCAAGATTTTGAGTTTTAAACATCTGATGATGCAATATNNNNNNNNNNCTCGCCCTGTGGTGGAATTCGAAGTTGCTTTAAAACTTNTTGGATCAAATTAAATAAACAAAATGACTGAAAATCACTGCATTTCAGGCATCCCAGTGAAAAAAGTGGTTGTTTAGCATACATCCGTGCAATCAACACTTTATGAAAAGTTGAAAGAGTACTAAAAAATGCATAACTTTCTTTTATTGCAG
Seq C2 exon
ATAAAAAATTCATCATTGCTAATGCTAGAGTGCAAAACTGTGCTATCATCTACTGCAATGATGGGTTCTGTGAGATGACCGGGTTCTCCAGGCCAGATGTCATGCAAAAACCTTGCACCTGTGATTTTCTTCATGGACCAGAGACCAAAAGACATCACATTGCTCAAATTGCTCAAGCACTGCTGGGGTCAGAGGAGAGGAAAGTGGAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023332:ENSGALT00000038412:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF075776=DUF1547=WD(100=96.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]