GgaINT0049685 @ galGal4
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr7:20330959-20334257:+
Coord C1 exon
chr7:20330959-20331999
Coord A exon
chr7:20332000-20334026
Coord C2 exon
chr7:20334027-20334257
Length
2027 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATAACTTTCTTTTATTGCAGATA
3' ss Score
10.39
Exon sequences
Seq C1 exon
TCGCGCCCGAGGCCGGCGGGCGGGGTGCGGCTTAGAGGCAACCCGCACCGGCCCGGCCCTCGGCACAGAGAGTTCCCCCTTCTTCGCCAGGATGGGGGCGTGGGGAAAGCCTCCCCCGGGTCACACCCCGGGAGGCAGGGACGAGCCTTTTCATTACGACGGGAACGGATCTCGAGGGCCTCGGTTGTCCCTTTTCTGCATGTTGATCCCCAGTAGCACCCCCCACCCGCAGACGAGGCGTGCACACGCTCGGGAGCCCAAAGAGGAGCGGTGGGGCCGGGCGGAGCCGCTGGGACCGGAGGAGGCAGCGGAGCCCCCCCCCCCCCCGGGTCCTCTCTCCCCCTGCAGCGGCGGCGGGGGAGGCGGCACGTCGCGGCGGGGCCGGGTGTAGCTCTTTCCCGATGCCGCTGTTTGTCGCGGAGTTTGGAAGAGATTTATTGGCTGGCTCTTGCTAAGCCACGCTTGAGTAATCCGAGCTGCTGCGCGCCGTGGTGAAACCCGGAGGGGGGGAACGTCACTCCCTCTGGCAGCGGAGCAACATTAGTCTTCCAGCCCTCTAACCATCGCTACAGCGTCGGAAACTGCCGGGTCACAGCCATTTGCTTTGGAAAATTGGCGATGTTTGGTGCTAGAGATCGATTACCCTCGTAATCTTTCCCCCACCTCCTCCTGCTTTACCCCACCCCTACCCGCCCCAGACAATAGCGTCCACGGTCCGCCGGGGAAAAAAATAGAAAAGAAAGCAAGGAAAGAAAGAAAGAAAGAAAAAGAAAGAACTGGGGGATGGATCTGACTCCGATAGGAAAAGCGTGTGTCTAGAAGTGGTGCTAATGGGAAGAGATTTCCGAGCTCCAGAGGACGATGGTTTCTCACAAAGGGTAGCTGGCTCGGTGCTCGGGGCTGCAACCGTGTAGGAGATCCTTGGAGAAGTCCTTGTGCACAGAAAGCCGAAGATCTGTACAAACATGCCTGTTCGCAGAGGCCATGTGGCACCACAAAACACATTTTTGGGTACAATCATACGAAAATTTGAAGGGCAAA
Seq A exon
GTAAGTTCTCTCTTTCTATCTATTTTGCTACAGTAGTTTCTGCTTGTGACTAAACGGACAGCAGCTCTGGACTATTTTAAGTTTGTCGCTTGGAAAGAAAACCCCAGAGGTGAGGAGGTTACTCCCTCGCAGGAGTAACGCTGTTTTTGATCTAGAATGCAGATTACTGACTTGAATTATTGTGTTGTCGTTTTTTTTTTTTTTCTCTCCCGTTTCTATTAACAGTTTTTATTTTTGATTGCATCTGTAATGTGTAACTACAGAAGTTATATCTTACCATTTTCTGAACTAGAGAGATGGCTGTAACACAAAGTTTGCAATCTTGCTTGTCTATACAATGCCTGAGAAATTTGGTTAGATTTATTGATTTTATAATTAATAATAGTTATCATTGTCTTTTCAAAACACAGCAGAAGAAGCAGCCTTTGATTTAGAGGAAACAAATAATATGCAAAGGAGCTATTAAATGGAAAATATTCTTACCTTATCATCATGACTGCATTTTAATGTAGCTGTCAGATATTTGCTTTGTTTATGGAAGCCTTAAATATCTATCAGACCAGTGCAAATGCATCCTCAGAGAGTCTATGAGATCTTTTCCAATGCAGCGGTTTGCTACCTGTCAAGGAGGCTGAAGCTGAAGTGGTATTCCTGGCCGGAACTCTGGGTTACTGTTAACAGTAAGAAGGAACACTTGATGCTTAAAATGAATTTCATTTAGAAACGGTAGTTTTATATATGTACATTTATTTAAATATTTAGCATATTTTTAGTATCAGTCTAGTGCAAACTCTTACAGCTAACTCCAGCTTTTGTACTTCCTTATACTTAGACACACATTAGCAATTTAATATTTATGTTATTTGAGAATAAAATAAAGACAGACTTTATAGTCCTAATTTTAAAAAATGCTACGTTAGTGTTGCTACTTGAGACAAGTTTTTATGTTGTAGACTATGTATGTTGAATATAAACCACTGCCAACCAAATAGACAAGTGATAGTGGAAATTCAACATGATTGAAAGACAGTGGAAAAAGCAAAAATGAGATCTCTCCAAATATTTCAGTGTTAAAAGACAAAATATTTTTAGAATTATGAAGACTTGTAGTGCTACCTTGGTATCAAGTCCCCTCTGAAGAGAGGGAACTTCTAGTGTGATTAGAGTAAGCAGAAATTGGCATTATTGACAATAAATGTATCAAAGCAGTACATTTATAATTAAAATAGGAGTAATGTGTTATAGTGGTAAACAGTGACAAATGAAATAACAGTCAAATGACAACTTCTGAACTTTTCTCTGAGGTGAGCATATAAGAAAGTGTGCTGGACTAAGGCACAGAACTTCAGTGGACTGTGAAAAAATGTTTCAAATGCCACAACCTTCGATTTTGATGTGCCTTCAATTTCATGTTCTTGCTAAGGAATATTTTCTTTTATAAGTGTAACTTTAAAACAAGCACAGAAAACAAATTTTTATCATGTTCTTTTCCAGATAGCTTTGCTAAAACAATGACTATAAACTCAACTCAATGAAAATCCCGACTTAGTAGACTCAGGTGGTTGCTCTTCTTCACAGCTCCTCAATTGTGTAGAACCCCCTTCCTTCTCATTTGCAGCCATCCCCCCTGCCCTCCAAAAAAATAAAAAATACTAACTTTTTAATGACTTCTTGTGGAGTCATGGCTGACAGGACAGTGCTCATCACCTTCCTCCTCATCATCTGAGTTTCACTGTAGCTACGAAGGGAAAGAAAATTAAAGTTGAGAAGTTTTGTGAAAAATTGCACAGTCTGGTAGTCTGGTTTTATTTCCTTAAAAGACAACTATCTTCACTTTTAATGTACTCTAAATTTATTGAAGTTGCTTTAAAACTTTTGGATCAAATTAAATAAACAAAATGACTGAAAATCACTGCATTTCAGGCATCCCAGTGAAAAAAGTGGTTGTTTAGCATACATCCGTGCAATCAACACTTTATGAAAAGTTGAAAGAGTACTAAAAAATGCATAACTTTCTTTTATTGCAG
Seq C2 exon
ATAAAAAATTCATCATTGCTAATGCTAGAGTGCAAAACTGTGCTATCATCTACTGCAATGATGGGTTCTGTGAGATGACCGGGTTCTCCAGGCCAGATGTCATGCAAAAACCTTGCACCTGTGATTTTCTTCATGGACCAGAGACCAAAAGACATCACATTGCTCAAATTGCTCAAGCACTGCTGGGGTCAGAGGAGAGGAAAGTGGAAGTCACCTACTATCACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075776=DUF1547=PU(63.2=92.3)
A:
NA
C2:
PF134261=PAS_9=PU(70.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]