MmuINT0085526 @ mm10
Intron Retention
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:63182056-63184278:-
Coord C1 exon
chr2:63184002-63184278
Coord A exon
chr2:63182287-63184001
Coord C2 exon
chr2:63182056-63182286
Length
1715 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTACCATCTTCTTGTTGCAGATA
3' ss Score
10.61
Exon sequences
Seq C1 exon
CCTCCGGAAGGTGAGCGGGATGGATTGGACTTCGGCGGAGAACGCGGGTGTCTCGAAGTGGTGCTAATGGGAAGAGATTTCTGCTCCCCAAAGAAGATGCGCTGCCACAAAGAGCGGCTTGCGCGCCGGCCTGGGCTCTAGCCCGGGAGACATCCCGGGAGAACTCTGAGCTCGGAGCGCTCGGCGAAGACCCGGGGCAACATGCCTGTTCGCAGGGGGCATGTGGCACCGCAAAACACCTTCCTGGGGACCATCATACGGAAATTTGAAGGGCAGA
Seq A exon
GTAAGTTCGTTTGTTCTCTCCCTGTCGCTCGCTTTCTGCTTTGGTAGAGCACTTGGCGTCCGTCACTTCCAAGCTAGAGGGATGGACAACTCCAGGTTGTCAAGTTAGAGGCTGGGAAAGCCAGGCAGGCAGTTCAGATGGCAGCGGGGGTGTTCTAATATTAATTTGGATTTACATTTTATATTATGGACTCCATTGTACAAGGCAATTTGATCCTCCTCTCCCACTGCTCCATTATCTGCCTTGCTACTTCATGCCCTACTAGTCTACTACCTTAAAGGGAACGTGCTGGTAAAACATGGGCTTGTATTCTAAAGCTTTTTCTGTGGCAGACTTTGTAAAGTCAGGAGCAGAACCGACTATAGGCTGGAAACAAGAACATGTAAATGGTAGTGGCGATGCCAACAGCTATGCAAACTGTTTTCTGCTGGTAAACTGCTGGGCTGTGGAATGTCAAGGATGCTGTTTGCTTGATGTTAGTTGGCTCTTAAAACTGAACTTTGTACGGAAACTGAAAATAGACGCAAAAGAATAATTTGGTGAGCAGTGGACTGGTTTGAGTGCAAGCAGCTCACTACTGAAAAACCGTATTTGTGTCTCTTTGTCGCTCCCTAAATATAAGGTGTAGAAATTTAAAAATTGAAGGGCAGTCTGTAAATCCCACAGAGATTGAATGTAGAAAAAAAATTTCTGTACTCATGTAAGCAAGCCACCAGGAATTATTTTCTATAAATATAATAATTTAAAATCCTGTAGTTATCCATTTGTATTCTGCACTAAATCTACCTCAGCGTGCATTTATGTTGCATACATTATATGTTTCTCCAGTACTGCACTTAGTGATGTGAAGATCTGGTACCTGTGAACAACATTAACTTCTCTATTCTGTTCCATATTCTTTATGGAAATAGCAAATATAACTTGTTATCACACCTAATGTGACTTGAATTAAAATATCTATTACATAAAATTATAGCTTGTTCCAAACAGAAAGTTTAAAAACTGTTTTCTATCACTATTCAAACTGTATAGTGTGCATTTTCTTTTTATCTTTTGGAATTGAACATTATGAAAGTATGAAGGTTTATTTTATTTATTGTTAATAAATGTGGAGTCATTTCATTGCTAAAGATAAGTGTCTTAAAAAATATAAGCATGTATTTAAAAAAAAAGAAAACCATATGCCTTCCTTATAGAAATCAAGTAAAAGCAAATCTAAAAATAAGGTACTTTAAGATAGTTGCATTCTAAGGTCCAGTCAAAGTTGAAGTGAGAAACCTGGCAGTTACAGAATGTTTTAATTTTCTAATTTAAGAAATTTTTATCATTCAACTAAATGGCATTCTAGAATTATCCATTGGCAAACTGCTTGTCAGTGTGTCCACCAGGACCTCCTGGGACTCAAAGAGCTTGAGAACTAGGCAACTTGGAAATTTCTGTTCTTGCAATTGAAGAGAAATTGTCTTAATTTCTTGTATTAAATCACGTATTTCCACAGATCTCACACCTCAAGTTTGTATAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTTTGTAATTCTCTTGGAAAGGTCTAAATGATTGGCATTTGGGGGAAGCCACTGTATTTCTGACCCTCGTTATGCAACAAATGGCTTTAGTGTTTGTGAGAACCTTTGGGAAGATTTTAAAAGAGATGTCCTACCATCTTCTTGTTGCAG
Seq C2 exon
ATAAAAAATTTATCATTGCAAATGCCAGAGTGCAGAACTGTGCTATCATCTACTGCAATGATGGCTTCTGTGAGATGACGGGTTTCTCCAGGCCAGATGTCATGCAGAAGCCGTGTACCTGTGACTTTCTCCATGGGCCTGAGACCAAGAGGCATGATATTGCCCAGATTGCCCAGGCGCTGCTGGGGTCAGAGGAGAGGAAAGTGGAGGTCACCTACTATCACAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742:ENSMUST00000075052:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGACTTCGGCGGAGAAC
R:
GACATCTGGCCTGGAGAAACC
Band lengths:
356-2071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types