RnoINT0077776 @ rn6
Intron Retention
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94207336-94208425:+
Coord C1 exon
chr10:94207336-94207443
Coord A exon
chr10:94207444-94208194
Coord C2 exon
chr10:94208195-94208425
Length
751 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CCTCTTACCTTCCACTCCAGGTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAGTAACTCCCAGCAAGTGCTGTTACGGAAAGATGCCAGTCCGCAGGGGCCACGTTGCTCCCCAAAACACTTACTTGGACACCATCATCCGCAAGTTTGAAGGCCAGA
Seq A exon
GTAAGTGTGAGGTTTTGGGGTGTGGAGGAGACGCTGCAGTGTGGGTTGGATGGCAGGAGGGGCCAAACTCTTCACTAACTTCTGATGGGGTAAAAGGAAAGGGCAGGGCTGTGGGGCTGAGAAGGGGGTATTTCTGAATACAAAATCTTTCGTTTTGATGTCCCCAACACCTCCTCCATATGTTCTGTGTCTAGGCAGAATGCAGCTCTTCTTCTACCTCCCTATAGCAGTTTTCTTGGTGTCCCAAACCCTGGCCTCCCCTCTCAGTCACTCTCCACTTACTCCTCCAGACCATTCATGCCTCTCCTAGAGGTTTGCTTGACTTCTTGCTTTTCACCCAAAGAGCAGGTCTGACTTCCTGGTCACAGTCCTGCTTTCTGGTCTGGACTCCCTCTACTGTTCCAAGAGTCCTGGGGTCTTCTCCCCACTCTACTGACCCTAGTCGTCCTGGTCTCCCCACAGCCCCCAAGCCTAGCCCCCACACCCTTACTTTTCTGCTCCCCCACACTCCTACTTTTCTATTCTCCACCTCCTTCCCGCCCCTCTGTGCTCCCAGAAGGAATGACCTTCCCCCAGGACTCTTGGTCCTCCCACCCTCCCTATCCCTGACCTCCACCTCCCTCATTCTGGTCTCTGCCTGCTCCTGCATATAAACCCTCTCCTGAGCTACTGTCAGTCCCTATAATCTTCCTCTCCTGGCTACCCACTTCTGGCTGCCACAGTTTTGCTAACCTCTTACCTTCCACTCCAG
Seq C2 exon
GTCGGAAGTTCCTGATTGCCAATGCGCAGATGGAGAACTGTGCCATCATTTACTGCAACGATGGCTTCTGCGAACTCTTTGGCTACTCCCGTGTGGAGGTGATGCAGCGGCCCTGTACTTGTGATTTCCTCACGGGCCCGAACACTCCAAGCAGTGCTGTGTCCCGCTTGGCTCAGGCCCTGCTCGGGGCTGAAGAGTGCAAGGTGGACATCCTCTACTATCGCAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078:ENSRNOT00000010816:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131881=PAS_8=FE(59.3=100),PF082777=PAN_3=PU(85.7=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAACTCCCAGCAAGTGC
R:
CGTCCTTGCGATAGTAGAGGA
Band lengths:
339-1090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]