BtaINT0079605 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48510580-48512494:+
Coord C1 exon
chr19:48510580-48510748
Coord A exon
chr19:48510749-48512307
Coord C2 exon
chr19:48512308-48512494
Length
1559 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGTGGGGTTCTGCCTGGCAGGCT
3' ss Score
7.68
Exon sequences
Seq C1 exon
GTGCAGCCCCTTCCCTGAGCATCTCAGACGCATCTGGCCTCTGGCCTGAGTTGCTGCAGCAAGTGCCCCCCAGGCCAAATCAGAGCCCCCAAAACCCTCAGGGAGACTCAGACTGCTGGCCTCGGGAGCTAGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
Seq A exon
GTGGGTGACTGACCTGTGGGCAGGGATGGGACAGCCACAGAGGGCAGGCCCGTGGCAGGCTAGGCACGGGCGCCCCCTCCTGGTGCCTCCGGGACATCGCTGCGTGTCCCGTGGCTTTGAGAATGAAAGTGAAAACCTGAAAGTGAGTCAGTCACTCAGTTGTGTCTGACTCCTTGCGACCCAGGCAAGAACACTGGAGTGGGAGTCCTTTCCCTTTTCCAGGGGATCCTCCCAACCCAGGGATTGAACCCAGGTCTCCCGCATTGCAGGTGGATTCTTTACCAGCTGAGCCGCAAGGGAAGCCCAATGATTTGAGAATGGCCAGCCCCCTTTAGCTGCAGACCTCCCCAGCCTTCTCACTGAGGACAGTTCCTTGGATGGCTTGTCCCAGCAAATCGGGAACATGCCAAGTGGGGAGAGGGGTGTAACTTCATGCCGAAACAAATTCTGTGAGTCCAGGACTTCCCTGGTGGTCCAGGGGCTAAGACTCCATGCTCCAATGCAGGGGGCCTGGATTCAATCCCTGGTCAGGAAACTAGATCCCACATGCTGCGGCTAAGAGTTCTTAGGTCGCGTCTAAAGATCCTGCGTGCCACAACTAAGACTCGGTGCAGCCAAATAAATACATATTTAAATATAAAAAAAAATACCGTGAGCCCTTGGAAAGGGGGTGTGGCCTGTGGATGTCAGGGCTGTGTGGCAGAGTGAGGGCTTAGGGGCAATACAGTCCTGGGTTCAAATTCTGGCTTGGTAACTTACCAGCAATACTGTGTATAAGTAACAACCACTCTGAGCCTTGGTTTACCCTTTTGTGAAATGGGGGTAACCAGAATACCTGTGTCGAAGCTTCATGACGAGGGCAGAATGTCTCTTTCTCAAGCACCCTCTGGGAAACAGTGATAAGGAGAGCTAAGCATTAGGCTGGTTTCTTGTAGCTGGGGGGTGGGGGACGGGGGTGACTTCTCTGGTCACTAAGGCAGTACAGGCGTGTTTGGGTTACCTCCGCCTATTCTATAAGTTGTACTGAAACATCTACTTAAGTTCTTTCCTTAGTACCATTCCTTCAAATTAAGTAATTTGGTACCCACCGTCCCTCCTAAAAAAACTTCACTGTGAGGACTAAATGATGTGTGCAGCTGCCTGATCACTGTGATTATCAGAGTCAGGGGTGTACTAAGGGGAATTTGGGTGGAGGCTGTAGATTGTAGGAGATTCCCTGGTGGCTCAGACATTAAAGAGTTTGGTCTGCCTGCAATGCAGGAAATCCGGGTTCAATCCCTGGGTCAGGAAGATTTCCCTGGAGAAGGAAGTGGCAACCCACTCCAGTATTCTTTGCCTGGAAATCCCATGGATGGAGGAGCCTGGCAGGCTACAGTCCATGGGGTTGCAAAGAGTTGGATGTGACGGAAGCGACCTCACACTCATGTAGATTATAACGGGGAAATAGCTTCATCCAGCAGGGACAGCCTGCAGCCTACAAAACTAAGGGCTGCCCTCAGGACCTAAACTGCTCTTGCCAACCCTGACCCTGACCCTGACTGTGGGGTTCTGCCTGGCAG
Seq C2 exon
GCTGGAGTCCCGCATGTCTTCAGACCTCAGCCGCATCCTGAAGCTCCTTCAGCAGCCCCTTCCCCAGGACCACACTGGCTACATCTTGGGAGCCTCCACCTCTAACGACCTGGCCTTGTTCCCTGCAACCTCAGCAACTCAGAGTCCAGGAACTCGGCTGCCCCGGGGTGACCCACCCCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCCCCTTCCCTGAG
R:
CCGAGTTCCTGGACTCTGAGT
Band lengths:
326-1885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development