GgaINT0143002 @ galGal3
Intron Retention
Gene
ENSGALG00000000505 | KCNH6
Description
NA
Coordinates
chr27:2607581-2608978:+
Coord C1 exon
chr27:2607581-2607842
Coord A exon
chr27:2607843-2608767
Coord C2 exon
chr27:2608768-2608978
Length
925 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCAAGCTGCTCTGTCCCCAGGCT
3' ss Score
7.61
Exon sequences
Seq C1 exon
CACACTGGGTGATGGACCCTGGAGCATCGACAGCATGGGGGATGCAAGTCCAAGGTGCTGAGGGGTCTCCTCTTCTTCCAGCCACCCCCCTGGACATCCCCAATATGTTCACCTTCTGGGAGGATCAAAGGCCAAACCATCACCCGGAGCCCCTACAGCATGTCTCCTTGGTGCACAGCTCACGGGACATCCCCCTGCACAGCGACTACAGACCAGGACAGATTGAGTCCAGGCTGGAGCTCCTGCAGGCCCAGCTCAGCAG
Seq A exon
GTAGGCAGGTCCCTGGGGTGCAGGGTTGGGGAGAACGCAGGGGGGCTCTGGGTCGTCACCTTCTGCTCTGCAGGGGTGGCTGCACCAGGCTCTGTGTGCAGCAGATCCCATCTCCAGACCTCCTGGGACAGCACACTCCCTGGGGAGGAGATGGGAGTGCTTTGCAAATGCAACACCTTCTCAAACTGCAAGTCTCACTGCAGTCGTGCATCTCATCTCTGCTGTCCCACCAGCCCTGGCATCTGCTGTTCTTTTTGAATAAAAAGGAAGAGCCTGCACCAGAGACACATGTTTAAAGGCCCCAGGCAGCACCTACACAAATAGATGGCACTCCCATGCACAGTGCTGCACGTATTCAACTCATTTCACTATCGTACCCATGTGTGTATTTTGGTGTCTCGCCAAGGTGCCAGCCCCAGCAGGGGGGACCAGATCTCCCACCCACTCAGTGCTGCCAGGGCTGTTGCCTTCAATGAGGGCCAAGCCCACTTCTGCCAGAGCTGCTCATTTCCCCCAAGGTTAGGACAAGGCAGAAGGAAGGCACTTACTCGTTTTTACATTTTCTTCTATTACAGAGTTCAGAAAGGCTGGCACCAGCCCATCTTGCTGCCATCTGTCAGCACAGACAGCTGGCCTGAAGAACTGGTCCAGGTTAAAACTAACCATTGCATTTTCCCCACCTCTGGAGTAGTTTTAACTTTGCTCAGTTCCCTGCTCCAGATCTTGGTTTGGCAACACAAAAATTAGGCAGGGAGGGACCGAGTGTGGCAGAAGAGAGGCAGTAGGACCAAAAAGCTAAAAGTTTCCCTGAACAGCACCAGGCAAACCAGCATCATCCCCAGGCAGCCAAGTCAACACCTTCTCCTGCCCAGGGTCTGGCTCTTGCAGGATGCACTGTGCTAACACCAAGCTGCTCTGTCCCCAG
Seq C2 exon
GCTGGAGTCCAGGATGTCGTCAGACATTAATATAATCCTCCAGCTCCTGCAGCGCCAGCTGTCCCAAGTGCCGCCTGCATACAGCCCCATTTCACCATCCTCTCACAACCTGGCCATGTATGGCATCGTCCCACGGAGCCTGGAGCCTCTCACCCCCTGTGCACCCCTGGAGGATGAGCAGCAGACGGCCCCAGGGCAGGTAAGGGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.380
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGGATGCAAGTCCAAG
R:
ATGGCCAGGTTGTGAGAGGAT
Band lengths:
346-1271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]