GgaINT0143002 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2694206-2695510:+
Coord C1 exon
chr27:2694206-2694386
Coord A exon
chr27:2694387-2695311
Coord C2 exon
chr27:2695312-2695510
Length
925 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCAAGCTGCTCTGTCCCCAGGCT
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCACCCCCCTGGACATCCCCAATATGTTCACCTTCTGGGAGGATCAAAGGCCAAACCATCACCCGGAGCCCCTACAGCATGTCTCCTTGGTGCACAGCTCACGGGACATCCCCCTGCACAGCGACTACAGACCAGGACAGATTGAGTCCAGGCTGGAGCTCCTGCAGGCCCAGCTCAGCAG
Seq A exon
GTAGGCAGGTCCCTGGGGTGCAGGGTTGGGGAGAACGCAGGGGGGCTCTGGGTCGTCACCTTCTGCTCTGCAGGGGTGGCTGCACCAGGCTCTGTGTGCAGCAGATCCCATCTCCAGACCTCCTGGGACAGCACACTCCCTGGGGAGGAGATGGGAGTGCTTTGCAAATGCAACACCTTCTCAAACTGCAAGTCTCACTGCAGTCGTGCATCTCATCTCTGCTGTCCCACCAGCCCTGGCATCTGCTGTTCTTTTTGAATAAAAAGGAAGAGCCTGCACCAGAGACACATGTTTAAAGGCCCCAGGCAGCACCTACACAAATAGATGGCACTCCCATGCACAGTGCTGCACGTATTCAACTCATTTCACTATCGTACCCATGTGTGTATTTTGGTGTCTCGCCAAGGTGCCAGCCCCAGCAGGGGGGACCAGATCTCCCACCCACTCAGTGCTGCCAGGGCTGTTGCCTTCAATGAGGGCCAAGCCCACTTCTGCCAGAGCTGCTCATTTCCCCCAAGGTTAGGACAAGGCAGAAGGAAGGCACTTACTCGTTTTTACATTTTCTTCTATTACAGAGTTCAGAAAGGCTGGCACCAGCCCATCTTGCTGCCATCTGTCAGCACAGACAGCTGGCCTGAAGAACTGGTCCAGGTTAAAACTAACCATTGCATTTTCCCCACCTCTGGAGTAGTTTTAACTTTGCTCAGTTCCCTGCTCCAGATCTTGGTTTGGCAACACAAAAATTAGGCAGGGAGGGACCGAGTGTGGCAGAAGAGAGGCAGTAGGACCAAAAAGCTAAAAGTTTCCCTGAACAGCACCAGGCAAACCAGCATCATCCCCAGGCAGCCAAGTCAACACCTTCTCCTGCCCAGGGTCTGGCTCTTGCAGGATGCACTGTGCTAACACCAAGCTGCTCTGTCCCCAG
Seq C2 exon
GCTGGAGTCCAGGATGTCGTCAGACATTAATATAATCCTCCAGCTCCTGCAGCGCCAGCTGTCCCAAGTGCCGCCTGCATACAGCCCCATTTCACCATCCTCTCACAACCTGGCCATGTATGGCATCGTCCCACGGAGCCTGGAGCCTCTCACCCCCTGTGCACCCCTGGAGGATGAGCAGCAGACGGCCCCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGGACATCCCCAATAT
R:
CTCATCCTCCAGGGGTGCA
Band lengths:
355-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]