HsaINT0084363 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63544249-63545264:+
Coord C1 exon
chr17:63544249-63544411
Coord A exon
chr17:63544412-63545077
Coord C2 exon
chr17:63545078-63545264
Length
666 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTGGGGTTCTGTCTGGCAGGCT
3' ss Score
8.04
Exon sequences
Seq C1 exon
ATGCAGCCCCTCCCCTGAGCATCTCAGATGCATCTGGCCTCTGGCCTGAGCTACTGCAGGAAATGCCCCCAAGGCACAGCCCCCAAAGCCCTCAGGAAGACCCAGATTGCTGGCCTCTGAAGCTGGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
Seq A exon
GTGTGTGTGCTGTGGTCAGGGCTGGGGGCTGGTCATGGGTAGCCCCTCCTAGTGGCTCAGACACATCACAGGGTGCCAGGTGGGTTTTAGAATGGGGCAGGCCATTTAGCTGCAGGTCTCCCCATACCTGTCATTAAGCACAATTCCCCCAATGACTTCCCCTAGCAAACTCTGGAACATGCCAAGGGAGCTTCTCGGGGGAGGGGCACAACCATGTGCAGAAACAAATTCCATAGGTCCTGGGAAAGGGAGTGTGTCCTGTGGATGGCAGGGCTATGGTGGCAGAGCGAGGGCTTAGAGGCAGAACAGTCCAGGTTCAAATTCTGGCTCTGTTCCCTACCAGCAAGAGTGTGGGCAAGTTACTAAACAGCTCTGAACCTAGTTTGCCCTTTTGTGAAATGGGGATAATTGGAACATCCACATCAAAGCATCTTGGGGACTGAATCTTGTATGCTTGGTGCCTGCTCACTGGTGTTGTTAAGAGTCAGGGGTGTACCAGGGGGATTCTGGGCCGGGGCTGTGGATCCCAGTAAGGAAATAGCTTCAGGTAGGCCCCAGGCCGCCATTCCATCTAGCAGGAACAGCACGCAGGCTACAAGATTGACAGCTGCCCTCAGGAACTACTTTTGCCAGCCCTGACCCTGACTGTGGGGTTCTGTCTGGCAG
Seq C2 exon
GCTGGAGTCCCGCGTGTCCTCAGACCTCAGCCGCATCTTGCAGCTCCTCCAGAAGCCCATGCCCCAGGGCCACGCCAGCTACATTCTGGAAGCCCCTGCCTCCAATGACCTGGCCTTGGTTCCTATAGCCTCGGAGACGACGAGTCCAGGGCCCAGGCTGCCCCAGGGCTTTCTGCCTCCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.718
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCCCCTCCCCTGA
R:
CTGGGCCCTGGACTCGTC
Band lengths:
319-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development