BtaINT0079609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48497437-48501249:+
Coord C1 exon
chr19:48497437-48497642
Coord A exon
chr19:48497643-48500823
Coord C2 exon
chr19:48500824-48501249
Length
3181 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TGCCCGGTCCCCACCCCCAGGTC
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATGGCTCTCACGGCAGGTCGGGGGCACAGGGGCCTGGCGCAGGCAGGGTCAAGTACAGGACCATCAGCCAGATCCCGCAGTTCACACTCAACTTTGTGGAGTTCAACCTGGAGAAGCACCGCTCGGGCTCCACCACAGAGATTGAGATCATCGCACCCCACAAGGTGGTGGAGCGGACCCAGAACGTCACCGAGAAGGTCACCCAG
Seq A exon
GTGCGGCCTGCAGGCCAGGGTGGGTGGGGCTGTGCTGGGCCCTACAGTCCCTCCTCAGGCCCGGGCTCTGGACTCCTCCAGGGCTGGGTGAACAGAGGGAGCTGCCTGCCCAGCCTGGTGTCTGGTCTGAGCTCCAGGCCTCTTGTCCTGCTAGAGTCTGATTCTTCAGACCTAAAGGCCCACCCTGAGACTCCCACCCTGACTCCCAGCCCCCGGACCCAGGGGAGGGTAGGTCAGCAGTGCCACATCCTAGGCCTGGAGAAGCTGGGAGGGGGAACTGGCAGGACACCTTGGGACCCGCCCAAGGCTCTGCCAGTCCCAGAGAAGGAGAAGCAGAGAGAGGAGGTGTGAGGGCCATACTGAGAAGAGGGTGGGGAGCCCCAGCCCTGCTCCTGCCCCTGGCCTTCGAGGTGACAGCCAGCCCCTAGGACAGGATGCTTCCGCAGTCCAGGCAGTGGGGAGGAAACCTGGCATCTTCAACTCCCTTGGCACGGGTCCCTGGGGAACAGTCAGGAATGCCTCAGCCCCTCCTTGGCCAGCCCAGGGCAAACTGCCCTGGGTTCTCTGTTCCAGCTGACCACACTGTCCCTCCTCCTGGGGCCTGATGCCCCAGTCCCCAGCTGACCTCTCCAGAGGGAAGTGCAGAGAGCACTGCCTAAGGTTCAGGGGCCCTGCCACTGTCTGCTCTGTGACCTTGGGCAAGAGACCTGCGCCTTTTCTGGGCCCCAGGGTCCCATCTGGAGGAATGACTTGAACCACATGGTCTCTGAGGACTCATTTGACATTGAGGGTGCTGGCCCTAGGAGGCACTGAGAGGTGCCTAGGCCAGGGCTGAGCAAGGGGGTGCAGGGCAAGGTCAGGGGCCTCCTCCAGCTCCCCTGGGACTTTGCTTCCTGAGGGAATGGAGCAGCTCTTTGCCTCCCACCTCCTTTCACCTGAAGCATCCTCTGTGCTGGAGCATGTGGGCTGGAAACTCCTTGTGACCCAGCCACTCACCAAGTACAAGAGCCCTGGGGCAGAAAAGACCCCAGGCTGTAGGGCTGGACCCTTGGACATCAGGCGGGGCGCGGGGGGCCAGTGACCTGGGAAGCCCACCTAGCTGTGCATCTGGGGACCTTCAGGTTGGTGACGGGGTGATGGGGGCTGTCGGGCTGGAGAGTTGTGCATGGTCCCTGCCCCAGCCCCTCTTGGCTTTACTAACCCACCCCATATTGTCCCTAAGGAGGGGAGGAGCCTGCCAGAGCTCAGAGCATGGCCCAGAGCAGGGAAGTCACACCGGCCTCAACCAGAACTCAGAGGGCCTAGAGGGCTGTGAGCCCATACCTGGACTCCTTTGTCCTGACAGCCCTGCACCTCCAAGGTCACTGGGGAGGCCCCTCATGCTGGCCCCAGAGGCGGTGGGAGACTCAGGAGATCTGTGGTGGAGGAGGTGGCACCCTGACCAGAAGCCCCCAGGATGGGGACACGTCTTCTGACCCCACCGTCCGAATTCTGACCGCCTCCCTCCCTCTCCATGTGCTCTGCTGTTTCCTCCTGGTTGGTCTTGAGCAGCCAGGGGTGGACATGGCCATGATGACCCAAGCTCTCCGTGCGCATTCAGTCCCCTTTAGTTGAGCCCCCACGTGGACTAAGAGGGGCATGCGGGATGAGGGAGCTGCCGCTGTAAGTCAGTGGAGATAACTGTGCTGTCAGGACATTTACAGGGAGCCGGGAGAAAATCAAAAAACATGGGTCAGGTCTGTGCAGGGTCAGAGGAAACTTCCCAGGGAGGCCAAACAGGAGCTGAGGCCAAGGCTGAGCAGGAGGTCCCTGCAGGGTGAGGATACTGTGGCCCCTCCCAGGGGTTTGGATGGCAGATGGGGGACCGTGTGGTTGAAACCAGCCTTTGGGTGGATCTTCCTTACTGTGATCCCATCTGCTAATGGACCCGGCTTTCAGGGCCAGAACCTTATGTTGCAGATTTTCTTAAACCAGAACCATCTGCAGGGCCCTATCCTGTGTGTGTGTGTGCGGGGTGGGGTGATGATCCATGGGACACCTTTCAGGCCCCATCCTTGTCAGGGCAGTGTCTGACATCCAATGAGCAGAGAGGAGTGATTATCGAGTGTAATGGCCTGTGCCATCAAGATGTACTAGCTTGGGACTTCCTTGGCAGTCCAGTGGTTAAGACTCCGAGCTTCCAAGGTAGGGGACATGGGTTCCATCCCTGGCCAGGGAACTAAGATCCCACATGCCGCACGGCACTACCCATAAAAACAGATGCGCCAGCTCATTAGTACAGCCAACAGCCCCCTGGAGTTTGTGGTCCTTTGTCGTCCCCTTCTGCCGGTGAGGGAACTGAGGCTCACAGAAGTTACAAAACCTGCCCCAAGACAGACAGCAATGTCAGACCCCAGATCAACCTGGGAAATCTGGCTACAAAAGGCATGCCTTCTGCTCCCAACTGCCCAGGCTCATGCTGGGCAGAGCCTGGGCATGTTAGGCTGAGCCCTGGTGATCGTATGTTGGCCTAAGTCTCAGAGGTGGGGGTCGGAGGGGCAGAGCAGAGGGGGTTCAGAATGCAATGATCAACACCTCCTTGGACATGTGCAAAGTAGTCAAGGCCACCAGTACCCAGACCCATCAAGGGTCCAGGTTAACTATACACCCCCAAAATTTGATTCCTTCCGTGGAAGGCTCTGAGAGTTGGCCCCAGAGTGGGCCCTAGGGGTCCAGGCTCCAGAGGGCCCTCAGGAATGAAGAGGCTACTTTGGGGGTAACTTGTCCCCATGCGGAACCTGATCACTGGAAACTTCCCAAACCCACCAGACAGACTAGTCACCCCTCATCACCCCCTCAATCGGCCTGAACCTGGCCCCCCTTCACCCTCCCCCGTCCTGTCTTCACGCACTCCAGCCTGGCCTGTTTATGAGGGAGTTCAAACCTGGGGTCACCATGAGACAGAGCTGCCCCCCACCTCTGGACCCCACCTCCTCCCAGCAATCCTGTCCCCTTAGGAACTGTCCCTGTCCTATGGGCCACACCCCCATCTTTGCCTCATCCCATCTCCCCTGCACTGCCCTGCCACCCACCCTCTCCCACATCTCCCTTCCTCGGCCTCACCCTTGCATCTCCACCCCTCCCAGAGCCATCTCCCAGGCAGGGGCCACCCGGCTGACCTCTGCCCGGTCCCCACCCCCAG
Seq C2 exon
GTCCTGTCCCTGGGAGCGGACGTGCTGCCAGAGTACAAGCTGCAGGCCCCTCGCATCCACCGGGGGACCCTCCTGCACTACAGCCCATTCAAGGCCGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCCGTCTTCACGCCCTACTCAGCCGCCTTCCTGCTCAGCGACCAGGATGAGTCTCAGCGCGGGGACTGCGGCTACACCTGCAGCCCGCTCACCGTGGTGGACCTCATCGTGGACATCATGTTCGTGGTGGACATCGTCATCAACTTCCGCACCACCTACGTCAACACCAATGACGAGGTGGTCAGCCACCCCCGGCGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCCGCCATCCCCTTCGACCTGCTCATCTTCCGCACCGGCTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(54.6=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development