GgaINT0142993 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2684222-2688807:+
Coord C1 exon
chr27:2684222-2684433
Coord A exon
chr27:2684434-2688378
Coord C2 exon
chr27:2688379-2688807
Length
3945 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TCATGCCCATCTCCTGGCAGGTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
AGGCTTCCCACGTGAAACCCAACCCTCCAAACTCCACCTCAGACTCGGACCTCATGAAGTACCGCACCATCAGCCAGATCCCCCAGTTCACCCTCAACTTCGTAGAGTTCAACCTGGAGAAGCACCGCTCGGGCTCCACCACGGAGATTGAGATCATTGCACCCCACAAAGTGACGGAGCGCACGCAGAACGTCACCGAGAAGGTCACACAG
Seq A exon
GTACGTGGTGGTGAGATGCCACCAAGGCAACGGTGCTGGTGCTGCCAGCAGGATGCAATCGTGGCCACCCCTGAGGGTTTTGGAGGAGAAGGTGGTGATATCTGCAGTTTCTTTAGGAAATGCCACCATCCCAGCATTTAATTTTTGTCCCTTCCTCCCAATGGTTGAAATATTCTTTCTTTCCCGAGTCAGTATTAATGGGTAATTTGTGGCTGGGGGGACTATTGGGCATGAACTGCTGGTGGTGTGACAGAGGCTATGAAGGGGACATACACATGGGCCCCCAGGGTCCTGCTATCCACGGTGCACACAGTGGGGACCCCGCTCTGGGAACACAAGTGGCCACACCAAGGGCCACGCGATCCCCTGGGAGACAGCAGGTGGCACTGCACTGTCACCCAAGTGGACACACGTGGCCCTGCGCTGTCACCAACACGGGTGGCACTGAGCTGTCACTGCATGGGGTGCACATGGCACTGCCCTGTCCCTAGGGGGACTAAGCTTCCTGGTGGCAAAGCGATGAGGACCAACCCTGGCTGTCACCTGCCACAGTGCCCGTGACCTGGGAGCAGAGAGGGGACGTTGCCCACAGCCACTTCCCCTCTTTCTAAGCATAGGAAAGGAAGTGTGTTTTAAATCACTGGTGGAAAGTAATGACTTTGATGCAGCATGAGAATTTAAAGTCCAAGGGAGATGCCAGGCCAGGATGTGAGCAGGGAAAGGGGCATAACTGTGTGTGCAAGGTGTTACTGCATCCTGCAGTTCTGGTTGGGAGCTCCTACCAGTGGGGAAACTGAGGCCTAGGAGAGTCATGATATACAAGGTATATTGAGGGGCACCTCCTGTCATTGCTAGGAGCAGCTGAGGGCAAATGTAATGAAAATGCAGCCATCTGAGCCCAGAAAAACCTTTAGGTTTGGCAGCTACCTCCATCAGAGCCAGGTGCTCTGCAGCACTTTCATCCCAGGAGCTCCGCATCTTGGCTGCAGCAAACCCTTCTACCCTCTGTGCATGGTGGACAGGCTCTCCCCAAATAGCACAGGACAATTTTTAGGCTTGTTCCCTCCCAGCTTGACCCCTTCAGCCCCAAACCTTTCTGATCTCAAGAATCTGCCCCAAATCCCACAGCAGGACAGCAAGTGGCCTCCATGTCCCCACCCTGGGGGACACCCACACACCAGGCAGTGCTTGGATGATGCTGGCATGGCAGCACCGGCTGCTGCTCGATGCAGGGTCGTTAGCTGGCAGCAGGGTGACGGGATCGGAGCTGACGGGTTGTGGCTGCAGGCAGGCACAGGGTCCTGTGGTGCAGCCATGCAGCACCCAAAAAGGTCAATCTTCCCTTCACCCATCTTCAGACGGGAGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGATCTCTTTTCCCCACTGCATCTCCCCATGACCTCAAGGGGGGGTTCATCCTACCCATCCTCACCCCATTGTCCCCTGTGCCTCCCACCAAGCCGCAGCTCCATGCTCCTGGCCACTAAATAATTCACAGCGAGGCAGAGACAGCAGCAAGACGCGGCGTCTAAAAATACTGGCTGGCGGCAGGGAGAGGCAGACAGCGACTGATCCGGGCACAGCAAGTGGGAGGAAGGGCTGGCCACAAGTGCAACGAGTGTGCCAAGCTCCAGCTGGAGGCCGGAGGTGCTCAGGGATGCAGCAGAGTCACTGCCACCAGGATGGGGTCCTCTTTCTGGGTCCCTCCATGGTGCTGCAGGGATGGGTGGTGGTGGAGGTGGGCAGGAGGGCAATGGAGTACTGAGTTGCATCAGGATTTGTGCCAAGAAGCAAACAGCAGGGAAGGAGGGTCAGTGCCTGCCTGCAGCCAGCCTGCCCACTCTCTTTGCTTGAGGGCTTCTTGGTGGCTCTGGCATGTCCCCCTTCCCATTCCCATCACAGGGCAAAGAGAAGAGGAAGAGGGTTTGGCAGTTGTGCCCTGAGCCCCACCAAGTACCAGCAGTGAGCTGGGTCAGCCATGTCGATCAGGGCCCCCTCCTCCATCACTCACAGCCCACACTCCCCCCACTGCCTTCTTCCTCTTCCTTCTCCTCACCTCTCCCGTGGCTCACCCAGCACCCCGCACCCCACACCATGACCCTGCAGCTGCAGCTGAAGCCAGTAAGTGCAGGGGAATGGGGACAAGGGACAGGGCAGCTGGCTGAGTCACCATGGGGGACACCTGGTGCTGCCACCCACTGAGTCCCCAGACCACCAAGAGGTGTCACCTGCAGCCCTCTGGGATAATGCTGCAAGCGCTCCCTGCTTCTGGGTTGCCTAAGATGCTCTTTTGGGGGTTGCTTCTTTTCCCTTATCTGCCTCAAATCTTTGTGGTTGTAGGTTGTTGGTTTTTTTTTACTGATTCCTGCTTGGAAAACAACAGGGTTTGACCCAGTCTTGCTCCAGCTTCGGGAGCAGGCTGCAAGCAGCAGGATGCACAGCAGGCACAGGGAGCACAAACATTTGAGATGCTCACATTTGGGACCAGCACCCAGCCAGGCAGGATGGGAGATTCAGCTCCGAGAGTGGGAGCACTGCTGCAATTCCCAGACACAAGGCATAGGAGCCCATCTCACATCCACAGGACACACCTCAGTATGGGGGCCACACGTTTAGCAGCATCACCTTGTCCTGCCAGAACCGCTCCCCAAACCCACGCAGCGATTCATTCCCTGCCACAACGATTGCATTTCAGTCACTTTTTCCTATCCCTCCCTCTCCGTCCGCCAGCGACGTCGGCGGCTCCCGCGGCCCCATTGGCGCTCTCATCCCCACGGGGGCATTGATTGGGTTTGATTAATCCACGCTGGGCTCCCAAATGCCCTTCGCAGCCGCATGCCTCCCGCCCGCCCGGCTGAGCGCGTGCGTGCCTACGCGGGTGATGCCGCGGCCCCGGTCCTGCACCCGCCGTGCCGGTCGCTGCTTGGGCGCATGGGGCTGGGGACCCCCATGGGGGACAGACGGGCTTCACGGAGGGTCAGCAGCCACCTGGGGCGACGGGCAAGCCGCAGGAAGGTAGGAGCTGGGGTTTTCCCAAGGGTCGTGGGATAGAGAAGAGGCTGCTCGGGGTGGGATGATGCACTGGGTTCCAGTAATGGGAGCCTGGGGGTAGTCCTTAAAGCCTTGAAGGAGATAGGTGTCGGTGCAGGGGGGATCAAGCCCTTCTTCTGGAGACGTCGGCAGAATTGTGGCAGTGCCCGTCACCATGGCCTCGGGGCACATGGGGCTCCTGGTGGGTTGTGGGACGTACATGGGTCCTTCTTCCTCCTCAGGGGTAGGTTTCACACCCATTTTTCTCAGGGCTCCGTGCAGGGATGCCTTTCACCCTCCTCCATTGGTGATACAGGTGGCTGGCACCGTGGGAACACCCAGGGACACGAAATGGCAGGGGCAGGCAGGGAGGCCCTGGCTCCAAATAACGCACTTCATGCCACCACCTCTCAGCATCCAAAGCAGAAAGCCCCAAGAAAGGCTTGCAGGTTGCCTAACATTCCACCACCCTTGGGACCACAACCCTGGGACTGCATCTCCAGGTTTGTTGTCCCCAGATCACTGTGGCAGGGACACCCAGCAGCTCCTGAGCTGGTGGCACACAAGGAGGCTTGGCAGGCTGCACTGCCAGTGTGGTAGGGTCTCATGGTGGATAAATGCCTTCCCCAAGAGTGTTCCAGCCATCAGAGCTGGCCAGGGAGCTGGGCAGACCTTGGTGTCAGGCACAGTGGCCAATTCACCCTGTGGCCTCCTGGATAGACACAGATGAGGGCAACTGAAGTGGTTGTAGAAAACCCGTTGTATGCTCTACGCTGCCCCACAGGCACATGGGAGCCCCTCATGTGGCTCCTGGCCTTGTCCAAGCTCTGTCCTGCTCTCCACATCCTTCTCATGCCCATCTCCTGGCAG
Seq C2 exon
GTGCTGTCCCTGGGGGCTGATGTCCTCCCCGAGTACAAGCTCCAGGCACCACGCATCCATCGATGGACCATCCTGCACTACAGTCCCTTCAAGGCCGTGTGGGATTGGCTCATCCTGCTGCTGGTCATCTACACGGCTGTCTTCACCCCCTACTCAGCCGCCTTCCTGCTCAATGAGGAGCAGGGGGAGGAGAAGCACTGGAACTGCAGCTACTCCTGTGACCCACTCAACATCATCGACCTCATCGTGGACATCATGTTCATCGTGGACATTGTCATCAACTTCCGCACCACCTACGTCAACATCAACGACGAGGTGGTGAGCCACCCGGGCAAGATTGCCATCCACTACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCCTTTGATCTGCTCATCTTCCGCTCCGGCTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.0=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]