RnoINT0077782 @ rn6
Intron Retention
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94213549-94217231:+
Coord C1 exon
chr10:94213549-94213754
Coord A exon
chr10:94213755-94216805
Coord C2 exon
chr10:94216806-94217231
Length
3051 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
GCCCATGGCTTCCACCCCAGGTC
3' ss Score
7.32
Exon sequences
Seq C1 exon
AGGGCTCTCACAGCAGGCCGAGTGGACAGGGGCCTGGCCCAGGCAGGGGCAAATACAGAACCGTCAGCCAGATTCCGCAGTTCACACTCAACTTCGTGGAGTTCAACCTGGAGAAGCACCGCTCAGGCTCCACCACGGAGATTGAGATCATCGCTCCGCACAAGGTGGTGGAGCGGACACAGAATGTCACTGAAAAAGTCACCCAG
Seq A exon
GTCTGGGTCTGTGGGACGGGGTGGTGGTGGGTTGTGTCAAACTCCCTGGGTCCCTTGGACCTCAGCTCTTCTGAGGTCGTGACTAANTAGGGAGATAGGACTTGTNCAACCCGCCCNGNCCCCATACCCTCCACCCCCACACATCTTGGTCTGAGTCCTCAGCCTCCTCTTGTACAGCTTGAGTCTGACTCTTGAGACGTGAAGGCCTGCCCTAAAGCCACATCCCTGAGGCCTGAAATAAGCAGAGGCTGAGGTGAGCAAGGCCTGCGAGTGCCTTCTAGGCCTGGAGATGCCGGGAAGAGAAAGCACACAGGTTACCTCGGGGCCTGCCTGTGGCTCTGCAATCACAAGGCAAGGGTGGCACAGAGGGTCAAGCCCGTGCAAAGACAAGGAGAGGCAGGAGGGATGGGATGAGCCTTGCCCGGGTCCCACTCCTTCCCTTTGCTTTTGGGATGATGACCACACCTCACCTCAGGATGCAAATAGAAAGCCTGGCAGAAGTGGGATAGGGCTGGAACCTCTAATTCTAAATGCCCCTCCTGTGCATCTTCTATTTGGCAAATGTCCCCTACTGGATCCTCTGCTGCAGGCGACCACACAGTTCCTTCTAAGGGGCCTTATTCTTCCAGGGGGAATTGAATAGAGCCCTGCTTGAGACTTGAGTCACCAAGATCCTTGGCCGAAGGACATCCCTACCTTTGGGCCTCAGAGCTATCATATACAGGAAAGAGTTAGATTGAATAGTCTCTGAGGACCCACTGACGTTAAGTAGTGCCAGCCCAGGAGACAGAAGGGGCTCTGTGAAGCCGTAGAGAAGAGCCTAGGGCACGCAAGGGACTGCAGAGGGGATGAGATGATCTTTTTTTCTGCCCCTTCTCATCTGAAGCATAGCCTGTGTCGGCACCAGCCACGGAGGAGATCATTTAGCCTCACAGACAGGATTAAGAAAAGGCCTGGCAGTGAGGAGAGCTCTGGTATCCTGGGGTGCGGCAACAGGACCTGCTTTGCAGCCTTTGCAGGGTTACTTTGGTGGGTCCTGACCAAAAGTGCACATGGACCCAGGGCTGACTGCGGAGTCAGGGCTGCATAGAAGGGTAGAGGAAAAAAATGAAAAAAAAAGAGGGTCCAAGTCTGTGTGAGATCCCAAGTGGATCCCTAAGGAAGTAAATGATGAACAAGGGCTGAGCCCAGCAGAACACTGCAGCTCCCACTGAGGGGTCAGGCTGCCAGTTTGGTACCATTTTAGCGGAAATCAGTTCCTAGATGGATTTCCTTGGTCCTGTGATCCCATTCTCCTGATGATCTTGTCTGCAAGATCAGAGCCCAGCCCAACTGCTTTCCTTATAACAGCACTGAGGGTGGAGGAGTGCGCGGAGACGTTCAATTCCCTCTCGATCCATCCTTATCCGAACAGTGTCAAAGTCGGACAGTGGAATCGGGAAAAATCAGGAACAGTGGTTCTCAACCTGTGGGTCGCGACCCCTTTGGGGGGAAATCACAAATCAGACATCCTAAGTATCAAATATGTACCTTAGGATTTCTAACCGTCACAAAATTACAGTTAGGGAGTAGTGATGAAAGAATGTTATGGTTGAGGAGGGAGGCTCACTACAACATGAGGAGCCTTATTAAAGAGTTGTGGCATTAGGAAGGTTGAGGACCAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTTTTAAAAAGGAAGGACCAACCACTGTCCTAGAAGCAGACAGATACATCCTGCTTAACCACATTCCTATGCTGTTTGTTGTCCATCCTACCCATGAGGGATCAGGGGCTCACAGGTCACTAGGCTTGCCTCGAGGCACAGAAGAAACAAATAGAAACCCTGGAGTTTAGCTCTGGTGTCTGGCTTCAAAACCACATCCCCTTCCTGATAGCTTTGCTTCGTGTTAGGCAGCTGGGATTTTCCGTCTGTCTTAGCAACCGCCCATTGCTACAGTCTCGGAGGCACCAGGACGAACGGACGGAGGTGACTCATCAGTGGTGTAGATGGAGCTCCGGGGAGCCTGGGGCGTGTTGAGTTTCCAGACTGAGGACTGAGCCAGGGAGGACCCTCATGGGCCCTCAGGAAGAAAGACTGTACTGGAAGTGACTTGTTCCCATTGAGATTCCCAAACTTGGGCTGGGGAGCTAGCTCAGTGGTAGAGCACTTGTTCGCCATGTGTCATAAGGCCCTAGTTTTAACCCTTAGCACTAAGACAGACAAGCAAGCAAGCACCAGTGGCCACTCAAAGCCTATCGAAGACAACCAGCCCAGCAAACTATCTCAGCCCAGGCTCTTCCTTATATTTTTGATTGTGAGCCTAGCCTTTAACAGCTGAGCCATCTGTCCAGCCCCAGACTCCTTTCTTTAAACACCTAGGCCTGGTCCTACTCACGCCCAAGAAAGCTGTTTCTGAAAAAGCTTGTGGTGCTTCCAGGGGATCAAGCATGTGGCAGAGCCCTGCTCTCTCGTCTCTTCTCATCTCTCTCTCTCTCTCTATCTTCTCGCTCTCTCTCCCTATCTACGTCCCTCTCTCCCTCTCTCTCCTCTCCTCCTCTCTTTCCCCTCTCTCTCCTCTCTCTCCCTCTCTCTCTCTCTCTCCTCTCTCTCTCCTCTCTCTCTCCCCCTCTCTCCCTCTCTCCCTCTTCCATCCTCTCTCCCTCTCTTTCCCTCTCTCTCCCTCCGTCCTCCCTCTCTCGTCTCTCTCTCCCCTCTCTCCACTCTCTCTCCCTCGTCTCTCTTCTCCTCTCTCCCTCTCTTCCCTCTCTCCACCTCTTTCCCTCTCTCATCTCTCTCTCCTTCCTCTCTCTCCCCCTCTCTCCCCCTCTTTCCCTCTCTCTCCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCTACCTCCTCCTGACATACCTGTCCCTTATGTACCCTTCCTTTGTCCCTCTACCTTTCATGACTTTGTGACAGCTCTCCTTCTCAATTCTCCCCATAGACCTGTCTTACTAGCCCTGGTCATCCCCACTGACCGCCCATGGCTTCCACCCCAG
Seq C2 exon
GTCCTGTCCCTAGGTGCAGATGTGCTGCCAGAGTACAAGCTACAAGCACCGCGTATCCACCGAGGCACCATTCTGCACTACAGCCCCTTCAAGGCCGTGTGGGACTGGCTCATCTTGCTCTTAGTCATCTATACAGCGGTCTTCACGCCCTACTCTGCCGCCTTTCTACTCAGCGACCAGGACGAATCACAGCGCGGTACCTGTGGCTATACCTGCAGCCCGCTCACCGTGGTGGACCTCATCGTGGATATCATGTTTGTCGTGGACATCGTCATCAACTTCCGAACCACCTACGTCAACACTAATGATGAGGTGGTCAGCCACCCACGACGCATCGCTGTCCACTATTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCCTTTGACCTGCTTATCTTCCGCACTGGCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078:ENSRNOT00000010816:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(31.0=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]