DreINT0084868 @ danRer10
Intron Retention
Gene
ENSDARG00000010296 | kcnh6b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6b [Source:ZFIN;Acc:ZDB-GENE-121214-55]
Coordinates
chr12:9282940-9287222:+
Coord C1 exon
chr12:9282940-9283133
Coord A exon
chr12:9283134-9286796
Coord C2 exon
chr12:9286797-9287222
Length
3663 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTAATCTTTTCCACACACAGGTA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCTTGAAGAGCAGTTTGAGGAACTCCAGAACTTCCAGCTCTGAGCGGATGAAAGCTTTAAACAGGTTCCATTCATTCCGTCTAAACCTGCGTCGACCCAGAAGATCCAACCCCTCCACAGCACACTCCAATATTGAGCTGGTTACCCCGAAAGTGAAGGAACGCACACAGAATGTGACAGAGAAGGTCACACAG
Seq A exon
GTAAGATGCAACTTTAAGCTTTCCTTGTTTCATGAAGGCTTGAATATACAGAGACAGATTATATTCATGTTAATGTTGAGTATTTAAAGTGTGTGTGAAATCAAAACTTACAGTGTTTGTTTTACTGGTGCGCATTGTTATTTTTAGGTGAACAATTAATCAGTGCAAGTTAATACACTGCAAACAAAATAAAATTAATCTTTAAAGCCTATCCATCCGTGTTTGGAGTGGTGGTCTTTCTCTGCACAATATCAAATAGGTCACTTGCTCTAGTTTACTCACGGGATGTTTTTTCCTTCAGTTTAATTACTTCAGTTCATGATTGAGGTGAATATAATGCTTTATCCCCACACGTTCCACATCAATTCCATCGTGCAACGATAACTTGCCTCAATTGTCATGCTTGCATTGACTTTGTGTGTAGTTTGATTGTTTGAATAGTTAATTAGGCATTTGGTGTAAACCCAGAATAATGGACCATTTTCACAAGACTGTGAAGATGCATTTAAGGATCATCAGCATCTTATAACATTGAAAGTTTTTAATAATTTGATTTTTTTTAAAACATATGAACATTTTTTATCAATCTTTTTCAATTTTTTTTTTCACATCGATAATTTACAGAATCAATTCAGTATACATATAAACATTCTTTTCTAACCACCCTCCACCCCCTTCCCACCCACACAAGACAGAACACTTAAATAGATATACTTGTAAGACATCGGGCTAATGTGTAAAGAGAACATAAACAATAAACAAACAATAATGACAAATCAAGGATTAAAGCAATGAAGTGTTAATGTAACATCCAAATTATTCATGAATTCAATAAATTTACATTGAAGATGTGTATACAAGTGAAGATAAGTACACTTATCTGCCACTTTATTAGGTACACTTTACTAGCACCGGGTAGGACCCTCGTTTTGGACCCTCATCCTTTGTGCCATAGATTCAAGAAGGTACTGGAAATACTCCTTAGAGATTTTGCTCAGTATTGACATGATAGCATCACGCAGTTGTAAATCTCCCGTTCTAACACATTCCAATGGTCTTGACCATGTCTACATTAAGTTTCTGCCGTGTGATGTGGTTGATTAGAAATTTGCGTAAATGAGATGTTATAACTAATACAGTGGCCAGTGAGTGAATTTATTCATGTAATACATCATCTTTGCATCAAACTACAAAAAACGAATTACCACTTATGCGAGGTGATTCTATGCAGCATCTATGAACCAGACAGTAAATTTCGGGTTGTTCTCTCTTCTAGATGACATCATCAGTCTCACACAATTTTTCTCCTTTATCTGAAAGTCTTGATATCACCATCGCAAAGCTTTTATTTTATTATTTCAGCAAATAGGATTGTAAAAGCATTAGTTGTTGTACTCTGCCATTCACTGCGCTGTAGGTCTACCCAACTGTGACGACTTTCGCTACTGAGAAACCCTGAAATGTGTAAAGGGTCCATTGAACTTGAGCAAAACATTTGTGGGAGGGAAAAAACATCTTGTTAGTAAACTAGAACGAGCTTCATGTTTAGTGTGAATCCAGCATTAGTTTACTACGAAGAAATAATGCTCACCAAGAACGCTCCGCCCCCTACTCAATATTCCATACTGAAATAAAAGTCTCAGCAACTTCCAGCTCAAGGAGACTTTAAAAACTTGCGCACAAAACATCCAGCTAATTTTCTGACGAACAAAATCTTCTTGATCTCAAAATTTCAGCACATTTTTATCATGATGTGCTTTTGATAGTTGATGTTGGGAAAAGAATGACGTCTGAAACATAGCTGTGACTGGCACGTGGAAAATAATGTGGCCGAAAAACACTTGTGGAAAGATCGTTAGGACAGAGACATGAACCCTCAGTGCAAAATAAAATGGCTATTTGCCATGACAGAAATCCATAACTACTGTGGCCCCTGGTCCAAAACTGTAGACACAGGTCATTGTTGAACTGCTCACAGTCTCACACCAGAAATGATTTGAATGGTTATTTAGCTAAACCTTCATATGTCAGTCTATTCAGAACAGTTTTCCCTAATCTGTGTGGCATATATTTGCTCACAGTCAAGCTTTTATACACATCCGCTAAAAACAGAAAACATCACATGATCTTAATATTGAGCTCTGTCATGTCAATGTAGTTCATGTCACTTCAGTTCATTTCGGTTTATTTTCAGTGGCCCCTCCAGGATATGGGGCAGCCAGAGAGACACAGAAATATCCGGTGATGATTTCATAAAAGTATAACAACAGTGTTCTCTTACCAGTCTCATATTCTTTTTGTCAATTGGCAGAAAAAAAGTGTAACACTTTATAATCAATACATTATGAATCATTTATTAAGCATTAGCATATAGTTAAATCATTATTTGTTAAGCATTAACTTAACCAATTTTAACAAGTTTGTCTAGAATACAGCATTTGTAACTGCAGTTATAAATTGCTTACTAACATTTATTAATGTAGAGTTGATGCTTAACAAATAATGAATTCGCTATGCTAATGCTTAGTAAATGATTCACAGTGCGTAATTTTGGTAAAGGGTTACCAAAATGAATTACAATATTAGACAGGTTTTGTGGTCAGGGGTCACATATAAATATTTATGTTTCCTTTTCATATACTGTATAGACAAGCATGTGTGTATTCATTTTGTTTGGTAATTGGGAGACAAAACTGCATCTACAATACCTGACAAAAGTCTTGTCGCCAATCCAAGTTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGGTATCAGAAATGGCTTATATGAAAGCCAAAGGCTTCTAGATTACGCTTATTTTACCAAAATGAAAAATATCATGCTTGATTTTGAATGATTTAATTAGGACAGTAAGGTCTGACTTTGCTTTGACAAAAGTCATGTCACTTAACAGAAATAATGTATAGTATAGAATATAAAGTCATGGTGCAGTGGGAAAAGATTTAATATTGTGTTTGACTCCCATGAGCTTGGAGGACTGCATCTATACATCTCTGCAATGACTCAAATCACTTATTAATAAAGTCATCTGAAATGGCAAAGAAGCGTTCTTGCAGGACTCTCAAAGTTCATCAAGAGTTTTTGGATTACTCTTGCCTCCTCCTTCATCTTACCCCAGACATGCTCAATAATGTTCATGTCTGGAGGCTGGGCTGGCCAATCCTGGAGCACCTTGACCTTCTTTGCTTTCAGGAACTTTTATGTAGAGGCTGAAGTATGAGAGAGCGCTATCCTGCTGAAGAATTTGCCCTCTCCTGTGGTTTATAATGAAATGGGCAGCACAAATGTCTTGATACCTCAGACTGTTGATGTTGCCATCCACTCTGTGCAGTTCTCTTGCACGTCCCTGTACTGAATGTAACCCCAAACCATGATTTTTTTACCAGTATATAACTCTGAAGGCATTATGACCTTTTGTTGCTTATTAGCAAACAAAAGGAAAAACTTCACTGTTAGTATATCAGGGCATTGAATCTTAATCAGCAGCTTGTACATTACAGTACATGTTTAAGAACAAACAAGCCATACATTTTTGGCTGTAGTTCACTTAACAGCCACCGCTGTCATTATAACAATACTTTTGAATTCTATAACTACCCATACCTAAAATTAATCTTTTCCACACACAG
Seq C2 exon
GTACTGTCTTTAGGTGCTGATGTCTTGCCTGAGTACAAGCTCCAGGCTCCAGACGTCCACAAGTGGATAATGTTGCACTACAGTCCGTTCAAAGCCATATGGGACTGGGTCATCCTCCTGCTAGTGCTCTACACTGCTGTCTTCACTCCCTTTTCAGCTGCTTTCCTCCTCAATGAACTCGAGGATGAGAGGAGACAGACCTGCGGGTACACCTGTAACCCTTTAAACGTGGTTGACGTGATAGTGGACGTTCTGTTCATCGCAGACATCGTGATTACCTTCAGGACGACGTACGTGAATCACAATGATGAGGTGGTGACCCATCCCAAGCGCATCGCTATACATTATATCAAAGGCTGGTTTTTCATCGACATGGTGGCTGCAATTCCTTTTGATCTGCTCATCTTCAGGTCTGGATCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010296:ENSDART00000152526:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.1=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]