RnoINT0077731 @ rn6
Intron Retention
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7375732-7380645:+
Coord C1 exon
chr4:7375732-7375943
Coord A exon
chr4:7375944-7380216
Coord C2 exon
chr4:7380217-7380645
Length
4273 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTCGTCACCCACACCTTAGGTC
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGGCCATGCACCCCCTGCGCAGTGGCCTGCTTAACTCCACCTCAGACTCTGACCTCGTGCGCTACCGAACCATTAGCAAGATACCCCAAATCACCCTCAACTTTGTGGACCTCAAAGGCGACCCTTTCCTGGCTTCACCCACCAGTGACCGGGAAATCATAGCACCCAAGATAAAAGAGCGGACCCACAATGTCACCGAGAAGGTCACCCAG
Seq A exon
GTAGGTGTCCAAGGTCCTTTCTGCTCACCTTAGGGGAAGCTGGACCTGGGGAGGAGGGACAAGGCTGTGATGAAAGTTGGGGGTTGGAAGTCTACTCAGTGAGGGAAGCTGTGGGGAGAATGCCTGGTGTTGGGTGTTTGAGTTTGAGATAAGAAGGCTTGTAGAGAGCGAGGCTGCAGGAGAGGGAGGGAGGAAGCCTTTAGGATGAGCAGGTGTGGGCAGGATGGGGTATGTGGTACAAGGTGAAGATGAGGCTCTTGAGACAAAGACACTGGGAAGGCCATGGTGGGTGAGAGAGGGCAGCGAGAGGGATGAGAAAGATATATGTGAGGGGGTCGTTGGGGCAATAGGAGCGGCTGCAGTTGGAAAGGACCTCACAAGTCAAGGTCAGGATGGTCTTGATTCTTGTAGGCCAGGGTGGTATACCAGATGGCCTGGGGTGTCTGCCATGCCCACCTAGTGTGGAGAGTAGGATCTCCTTCTTGTGGTGGGTGGGGAGCCCTGTAATGGGTAAAAAGCTATCAAGGGATCAGAGAATAGCAGCTTTTGATTTCTGAGCCCTGTTTTTAGGGCTCCTCTGGCTATGTCCCTCCTAGCAGTGAGGTGGCTCGCAAGACCACTGCCTACTCAACCACAGCAACTTAGCATGTTGGCAGTGGTGAAGTCTTAGCAGTGAGAACTCCTGGAGAAGAGGGGCCTGTTGTTTTAGGCTGCCCCCATGGCGGGTGCCCTGTGAGGGAGCGGCCCAGCTCTGGGCTCCCTTGGCCTGCTTTCTGGCCACACTCCCATGCCTCTAGCTCTCTGGGTTCTGCCTGCCCCTTTGCATTGCCTACAGAACATGTCGCTCGCTTGCCCTGAAGCTTTTATCTGGTTCACTCTTCTCCCTCTCTGGGTCCCACCTGGGTGCCTTAGCATCTGCCCCGTTCCTGGACCCAAAGTGTGTATGCCTTCGGCGTGTGAGTCTCTGCCTGTCTGTTTGTGGACTGCCTGTGGTGCCCCTGCCAGTCACCTGGCGTCTCTCCATCTCTGGGTGTCTCTGCCTGACTCTGGCTGGCTCAGCACTGGACTGGCGGGGCGGGGGTGTTGGGGAGACCATTAATCTGCGGTGACAGGCCAGGCTGCCGGGTGGAGGGGGAGGGGCTAGGGCTGCGGGAGCGGCTGCAGCAGGAGCCTAGAGCGGGTTGCAAGGGAGGGGGCCGCTGGCCGGGCACGGGGCAGAGGGCGGGCACGGGCTGGGCTGGGGGAGGGGGGGCAGAGTGGAGTCGGGGTGGGAACCTGGCAGAAGGAGGGGCTGGCCGGCAGAGGAGCTGCGGTTCCCACCGCGGGTGCTGGGCTGGCGGCAGGCGGGCAGAGCACAGCACCCTAGTAGCGGGGGCCCACACCAAGGGGCCATGTGCAGCAAGAGCCAAGCAGGCAGCTGTCCATACTCACTGCCTAGGTGACCCCAGCCCCAGGGCCCAGCCCCAGCCATTCTGGCTTCATGCCAGAGGCGGTTCTGGCTGCCGCCTGGCCAGCCTTAGGCTGGCAGCCTGGGCTGGGACTGCTGCTGGGGCACAAGTGAGGCCCTGGCCGGGCCTTGGGGCCTTAGGCCAACCAGGCTGGGGGTAGATAAGTCCTCCATGGCGATTCCAGCGGGGAAGGAGAGCAGGACAGGGGCTCTGCAGACCAGGGCCCAGAAAGGCCGGGTGAGGCGGGCAGTGCGCATCTCCAGCCTGGTGGCCCAGGAGGTAGGTGATTCCCTCAGCACCCTATTCTTTTCTTGGGCTGGGACACCCAGGCAGGTGGGAGTGTGGCCCAGAGGGCTCTGGCTGCAGATGGGGAGAGGGCTTCGGAAAAGCAGGACAGGTTGGGAGCTCTGTGTTCTTCCATGTGGCCCACCACTGAGCTCCTCATTGCTCTCCTCCTGGCTGCTGGCTAGGTTCCCGGGGTTTCCCTTGCCTTGGCAACCCTTTTTCTATGGCTTCTATGGCCCACAGTCTTCTGGTTTAGAGTCTAAGGGATGGTTTAGAGATGCTAGGAAGCAGTTAGTTGTTCAGAGACGATGATGGGGAGACGGAGAGAGACAGGAACCATTAGGCAACAGCTAGATCTGACACAGGTGCTGGGGCTCCCTCACTCTGACGTTTGTGGTCAGCAGTGGAGGCTTGGATTACTCTTGTGGGTGTCAGGAGAGAAGGGACTGGAGGCTGCTCAGTGGGCAATGAGAGCAGACTGAGAAGAAGCATTGGCTCACCTCTTCAGGGCATCCTGGGCCATTGTCCCATCAGCTGGTGATTGCCCCTCCTCACTGGCTCTCCTGCATTAGAACCTGGAGTAGCTCTGGGTGATTCTGAGAATCCCCTCCTTCCCAGCATCACTGCTGGCCCCGACTCCCTCTGAGTTCATAAGCTCCTCCCAGTGGGGGGGCGGGCAGACACAGGTGAGAGTTTTCCCTTCCAAGGTAATGACCGACCCAAGGTTGAGTCAGTCTTCTGTAAGACAGCAGATCACAGGGATTATAGATCTAGCCTAGAGCCATGTGGTAAGCCAGCGGTTTCAGAGAGAGGTAGGACTGGCTCTTTTGTAGATCGAATTAGCAGGTTTGGGCCTTGTATCCCAGACCTGATGAGGATTTGAATGCAAATGTGCACTGGGGCAGACCTGGGGGACAGGGTCACTGCTGTCTGAGGTGGTCCAGCATAGCTCCCAGGCCTGTGCTCAGGTGCAGAGAGGGGTCCTATGGAGTGACAGCCACTCTCTTTTGCTCCTTGTCTGTGGGGTCCTAGCCTGTTCTTTTTTGATGGCTTGAAATGTCACTAACCTCGTGTGTATTAACCCTGTGTTTTGATTAACAAGCCCTCACTCAGTCTGAAGTCAGGGCAGACCTAGGATCTTCCTCTGACCTGGTGCTCATTCCCTCCCACCCCGTCTCTTTCTGTGAAGTCTCTGTGTCTATTCCAGGGTGGCCAAACCCTTCCTGAAGATCCATCTTTCTTACTAACTCCATTCCCTAAAATGGTCTCTAAACAGCACCACCTATGCAGACAGGCTTAGGGGATTCCAACTTGAACATGAATAAGACTCTTTAGGACTTCATTGAGCCCAGAGACCCGAGTTTGGGGGGCCCTGGGATTCGAGGCTTCTGGGACAGGGCTAAAACCTCTGGGGTTGGGGAAGGCTTAGGGTCTTGTTGCAGCCATGGCATGGTCCAAGGCTAGAGAGATTGAGGAAGGGAGTCTAGCTGACTCAGAGTCTGCCAGAGGCTTCTAAAGGTGGGTGGGCAGGGGCCTTCTGACACTTGGGAAAGTGAGTTCTCCCTAGATCTGGGAGCAAGATTGCTGGCCGTGCTTGTTGCCCCTTGGCCCTAGTGGGCTGCCTTTGCCTGAATGTTGAGGGACACGTGATTTCCCCCGTGACTGAAAATGGGGTTCTGTTCAGGCCAAGAGTACATCTCGGAGCCATCCTGGGTATGCAGCCCTCTGTGTTCTTGAGGTACCTGGGTATGCAGCCCTCTGTGTTCTCGAGGTACCTGGGTTGGACTCTGTCCCTTGTGTCCCTTTGTAAGAGTGTGGGAGACTCTGTGGGTTGAGATGGAGAAAGGCCTGAGAAAGCATAGCAGCAGGGAGAGGGTTTCTTCTCCCAGGGAGGCCAAGGAGTCTGAGAATGGTGACTGGCATCCCTGGACAAGTGGTCTGAAGTGAGGGAGCTGCGATGACTATTTTATGTGTTGGAACTCTGGCTCCTGGGCTCACTGCCCAGCTGGGAACTGCAGTCCTTAGAACATTTTCTAGACTAAGATGGTGTGTGTGTGAGCATGTGCGAGTGAGTGTGTGTGTGTGTGTGCATTCGTGCAAGTGTGTGTGTGTGAGCATGTGCGAGTGTGCGTGTGTTCGAGTGTGTGTGTGAGCATGTGAGAGTGTGTGTGTGTGCGTGTGTGCCAGTGTGTGTGTGTGTGTCACTTTTGAGGCCGTGGGGCAGAAGAGTATAGTGAGAGTTGCACTGTGTGGTCTGAGGGTCTGGACTGTCTTGTGGTGGACACAATATCAGGCCTTCCTGCATGATGACCCAAGTTCATGTATTTTGGGTATTGTCAGACTCTGGAGTCAGCCAGGATATCCCCCTGCTGCCTAGCATTCTGGGAACTGTAGTGCCCAGGTTTGGGGTAGCCAGTTTCTATGGCTACTTGGTTGAAGATGAACATTCTGATGGAAATATACTCTACTTGGTCACAGTATGGAGGGTACCGACTTTTGCTCTGAAGTTCCATGACCCTTCCTCGTCACCCACACCTTAG
Seq C2 exon
GTCCTGTCCTTGGGAGCCGATGTGCTTCCTGAATATAAGCTGCAGGCCCCAAGAATACACCGCTGGACCATCCTACACTACAGCCCCTTCAAGGCAGTGTGGGACTGGCTCATTCTGCTGCTGGTCATCTACACAGCTGTCTTCACACCGTACTCGGCTGCCTTCCTGCTGAAGGAGACTGAAGATGGGTCCCAAGCCCCTGACTGCGGCTATGCCTGCCAGCCTCTGGCTGTAGTGGACCTCCTCGTGGACATCATGTTCATTGTGGACATCCTTATCAATTTCCGCACCACCTACGTTAACGCCAATGAAGAGGTGGTCAGCCATCCTGGCCGCATCGCTGTGCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCTGCCATCCCCTTCGACCTGCTCATCTTTGGCTCTGGCTCTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872:ENSRNOT00000013800:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.6=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]