BtaINT0079557 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004078 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr4:114332658-114337911:-
Coord C1 exon
chr4:114337700-114337911
Coord A exon
chr4:114333087-114337699
Coord C2 exon
chr4:114332658-114333086
Length
4613 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CACCTTCCCCGCCTGCCCAGGTC
3' ss Score
8.14
Exon sequences
Seq C1 exon
GGGCCATGCACCCCCTGCGCAGCGGCCTGCTTAACTCCACCTCTGATTCGGACCTCGTGCGCTACCGCACCATCAGCAAGATCCCCCAGATCACCCTCAACTTCGTGGATCTCAAGGGCGACCCCTTCCTGGCTTCGCCCACCAGCGACAGGGAGATCATAGCCCCTAAGATAAAGGAGCGGACCCACAACGTCACCGAGAAGGTCACCCAG
Seq A exon
GTAGGCGCGCCTGGCCCCCCACTCACCTGGGAGGAGCTTGGAGGGGATGGAGGGGTGCAGTCAGTGAGGGCTTCCTGAAGGTGGTGGCTGGGGGTGGGGGTGGTGTTTCAGTGCTGGGACGAGAGAAGAGTCTGAGAGCTCCTGGAGAAAGGGAGCCTGGAGTGGGGAAGCCCGGGGAGGGGGCAGGTACAGGGGACAGGTGGATGGGGCTTGGGGAGGACAGGGCAGTCGAGGCTGGGCACCTGGTAGGGTCAAGGTGGGTGGGAGAAGGCAACCATGAGGCACAAGGGGGTCTGCGCACAGGGTGTGGTAAAGACATACTGGAGGCAAACCAACAGGCTTCACATCAGAAGGGGCCACAGAGGTCAAGGTGGCTTCCCTGGTGGCTCAGACAGTAAAGAACGTGCCTGCATTGCGTGTGACCCGAGTTCGATCCCTGGGCTTCAGAAGATCCCCTGGAGAAGGGAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCTTGGCAGGCTACAGTCCATAGGGTAGCAAAGAATTGGACAGGACTGAGCAACTCACACACCCAGAGGTCAAGGTTGGGGGGTCCTGATTCTTCTAGGCTAATGTGATGAGCCAGGCTGGGGTTGGGGACCCAGTGCCAGGATGACCCAGAGGTGCCCACCCCTGTCTGCAAGCCACAGAAGAGGAGAGTTTCCTTCCCAGGTCGGGAGGGGACTCGATGGAGGTTGGGGAACACATAGAGAGAGGGTCAGGTCTTTGAATCCTGGGCTGGAGAAGACTGCCAGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCGAGTGAGGGAGCTGTCCGTCTGCTGGGGCCTCCTCGGCCCTCCTCCTGGCCCTGCTCCCGCTGCTGCCTCTGGCTCTCTGGGTCTCTGCCAGGTCTCCAGCCCCTTGGCCTTGACTCCAGAACCTTCCCCCAACATGCTGGGCCCCTTATCTGGCAGCCGACCCCCACTCCCCCCCACCACCGCCCTCTCCCCTGGCCCCACCTGGAGCCCTGCCTGCCACCCTGCTCCCGCGTGCCCACGGGGTGTGCTGTTTGTTGTGTTGTGGGCTCAGTGTGTGTGTGTGCGCACACACGCACGCGTCTGTGTGTGCGCACACACGCACGCGTCTGTGTGTGCCAGTGTGCGGGTGTGTTCCTGGGCTCTCTGGTCACCGGGCAGGCAGTCTCTCTGTTTCTGGGTGTCTGTCTGACTCTGGCCGGCGGGGCGGGGGTGTTGAAGGGCCCATTAATCTGCAGTGACAGGCCGGGCTGCCGGGGGCCGGGGGAGGGGCGCGGGCTGCAGGAGCGGCTGCAGCAGGAGCCCCGGGCGGGGGCCGCGGGGGAGGGGGCCTCCGGCCGGCGGGCGGGGTGGGGGTGGGGACCCGAGAGGAGGAGGGGCCGGCTGGAGGAGCTGGAGGTTCCGAGAGCGCCGGGCGCCGGCTGCTGGGCTGGCAGCGGGCAGAGCGCAGCTCCCGGCCGTGGGGCCCGCACCGGGGTTGCGGGAGGAACCATGGGCCGCCCTGGCCAGGTGGGCTGCTGGCCACACTCCCTGCCAGGGTGACCCCAGCCCTGAGGCCCAGCCCCGGCGACCCTGGCCGCCAGGCCAGAGGCTGCCCTGGGAGCCAGGCCGCCAGCCTCTGGGGTGCAGGTGAGGTGCTGGCGTGGGCCCTTGGGGCCCCAGGGCAGGCAGGCTGGGGGGAGCCAAGTCCTCCATGGCGGCCCCGTTGGGGAAGGCGAGCAGGACAGGGGCCCTGCAGCCCAGGGCCCAGAAAGGCCGGGTGAGACGGGCCGTGCGCATCTCCAGCCTGGTGGCCCAGGAGGTAGGTGTTCCCCCCAGCTCCCCTCTGCCCCCCGCCCCCCACCCTCCTGCGGGTCCAACGCGGCCCTGAGGGCTCTGGCTCCAGGTCAGGAGAGGGCTTCCGAGGTGCAGGATGGTTTTGAGGGCGGGGAATCCCCGGGAGCTGTGGCCCGGCCTGTCCCACTCTTGGCTCCAGCTTGTTCTTCTCCAGTCCCGCTGGGCCTAGGTGGACAGTGTTTGTCTTGCCAGGGCTTCCTTCCTCCTTGGCCTTCCTGGCCTGGCCTTCTAGCTGGATACACGGAAGGAGGAGAGGGGAGAACAGGAAAGTGTGTGCCCCAGAGAGCTCGGCGGGGAGCTGGGGGTGGCGTGGGGCGGGGAGGAGGGGAGCCACTCCGGCTTCCACCCCACCTCCCCTGGTGCGCAGGCAGCAGCTGGGCCTGGCGCCCAGGCCCGGGGCCCCACCCCGCTAGCACTCCGTGCCTTGGGGGTGGACTCTGGGGGTCAGGGAGGCATGGGCTGCTTCAGGGGTCTGGGTTTGGGGGCTGGGGGTCAGAGGCCACTGGATGAGCGGAGAGGGTCGTCTGAACCAGGCACCTGGTCCAACCTGAAGAGCTGGTTGTCCCCCCAGGCTGACAGCTTGGTAGGCACCTCTGGGGAGCCACCTCTCCACATCCCCCCCACCCAGGGGCAGCGGGGTGGGGTGAGGGGCTCTGTCACAGAGCCAGGGGCCAGCTCAGGATGGCAGGGGGAGCTGGAGGTGGCTCAGGGTGCGGTCTGAGCACCCTTACCTCTGTTGCCGGCACCTGAACCCTCTGCCTTGGCTCTTGCGCTCCCCCCAGTGCAGGGACAGGTATGGGGGGGGGGGGTGGATTCTCTCAGCCACAGGTTGAGCTCAGGTTGAGCTTAAAAGAGCTTTAGCATTCTGTGTGACCGTGGGTCAGGGGAGGTTACACGCCCACCCAAGTCCAAGGCGGTGTGCTGAGCTGTTGGCTGCAGACTTGAGCTGGGCCGGGGCCTGTAAGATGGGGTCTGTGGGTCCCGGGCTGGTGCCCTGGGCTTGCCCCCGGCGTGTGCTTGTGCCTGGGGCGGGGCTGGCCCTGCTGTGGGCAGATGCGGGGGGGTGGTGGGGGGGCAGGATCACATTTATCAGGTGTGGTCCAGCCCAGGGGGCCTGGCCACTCAGTGGGGTGAGGAGCCCCCTGCAGGAGCCTTCTTCTGCCTCCTGTCTGCTGGGTCCCTGGTCAGTTCTGTTTTTTCAACCCTCTCTTGATCCCAGGAAGGTCACTGCCCCATGTTCTCTGCCTTAAGGAGCGAGTGGCTGGGGCCGAAGTCTGGGCAGAAGTTGGGGCCTCGAAGCCACAGACTCCTTCCCCTGCCCCAGACCCCATCGCGTGCCTCCAGAGAGCCCCTGTGGTTACCCTCGGGGTGGCCAAACCCCCAGCCACAGCTGGTCTTAACTTCCAGTTACTTCTGCTAAGGAGGTGCCTTCCAAACAGTCCATCTGTTTGTAAGGGTGGTTCCAGGGGGGGTCCCCAGCATGAACGTGAATGGGAGTCTTTGGGGCTCCACCCCCTCCCCAGGACAAGGCCTGAGGATGTGGGCCCTGGCATTTTGTGCTGTTCCTGCAGGGCCGGCAGCCTTGGCTCTTAAGGGGGAGGGTGGGTGAGGCCTTGCACCTGGCTGCCCAGGATGGCAGAGCCAGGCTGGGAGAGTTTGGGGATTGCGTGGGGGCAGGGGGAGGCCCCAAGGGGACAGGCCAAGGCTCCCAGGGTGGCGTGGGAAAGCTGGTCACAGCTCTTCCTAGTTTGGCTTGGGGGTGGGGGTAGGTGTGGTGGCTGCTGTCCGCAGATCTGGGTGGCGTGCCGCCTCTGCCTGAGTGATGAGGGGCAGGATGAGAGACGAGCCTGGGTGGGCTTGGGGGTCATGTCTGAGTGGCGGCCCCAGGCAAGGGTGAGTAGGGAGAGGGGAGCAAGTGTCATGGTGTCTCCTCTCCTGGGTGCCAAGGGACCTGAGTCTGGGTGGCTGGTATCCTTGGGTCAGTGGCAGGAAGGGACACTTAGGCCCTCAGTCCCTGGGCCACCAGCAACGGGACTTGCAGGGAACCACAGTGACTACCGCTGTTTACATCGCCCTGGGCTGGAAGCTGTAGTCCTTGGAGCATTTGCTGGCAGACACAGTGGTGTATATGGGACGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCCTACACCCCCCCTCCTACAGATCCCCTCTTACACCCCCTCCTCTTACTCTGCTTGGCCCCTTCTCTGAGGGCCCAGCCCAGGCGTCACAGGGCCTGTGGCCTGCCCTCCCCCGCCCCACCCCTCAGCGCCACCTTCCCCGCCTGCCCAG
Seq C2 exon
GTCCTGTCCCTGGGGGCTGACGTGCTGCCGGAGTACAAGCTGCAGGCGCCCCGCATCCACCGCTGGACCATCCTGCACTACAGCCCCTTCAAGGCCGTGTGGGACTGGCTCATCCTGCTCCTGGTCATCTACACCGCGGTCTTCACCCCCTACTCAGCCGCCTTCCTGCTGAAGGAGACTGAAGAGGCGCCCCTGGCCCCCGACTGTGGCTACGCCTGCCAGCCGCTGGCTGTGGTGGACCTCATCGTCGACATCATGTTCATCGTGGACATCCTCATCAACTTCCGCACCACCTACGTCAACGCCAACGAGGAGGTGGTCAGCCACCCCGGCCGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCCGCCATCCCCTTTGACCTGCTCATCTTCGGCTCTGGCTCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004078:ENSBTAT00000005328:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.6=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]