HsaINT0084308 @ hg38
Intron Retention
Gene
ENSG00000055118 | KCNH2
Description
potassium voltage-gated channel subfamily H member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr7:150952425-150957502:-
Coord C1 exon
chr7:150957291-150957502
Coord A exon
chr7:150952854-150957290
Coord C2 exon
chr7:150952425-150952853
Length
4437 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCCGCCTTCCCCGGGTGCAGGTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGGCCATGCACCCACTGCGCAGCGGCTTGCTCAACTCCACCTCGGACTCCGACCTCGTGCGCTACCGCACCATTAGCAAGATTCCCCAAATCACCCTCAACTTTGTGGACCTCAAGGGCGACCCCTTCTTGGCTTCGCCCACCAGTGACCGTGAGATCATAGCACCTAAGATAAAGGAGCGAACCCACAATGTCACTGAGAAGGTCACCCAG
Seq A exon
GTAGGCGCCCAGCGGCCGGGCTCTCCTCTCACCTTGGAGGAGCTTGGAGAGGGGGTGGGAGTGGGCTGTGATCCAGAGCCGGGTGGAGGGGGCTAGCCAGTGAGGGCCTCTTGGAGGGAGGCAGACCTGAGGGTTGGGGTTGGCAATCTATTCCAGAGCTGCGATGGGGGGAGAGGGGACAGTCTGAGAAGTCCTGGAGAGGGGACTGGAGAGGTCTGGTAAAGGGCTGGGAATGGCAGAGCGGAGGTCGGGTGGATGGGGTGCGTGCCTTCGGGGCACAGGGTGAGGACAGGGCAGTTGAGGCTGGGGACATGACAGGGCCAGTAGCAAGGGGGGAAGGCGGCCTGAGGGACATGAAAGGTCTGGCTGCAGGGTGTGTGAAGGAAGTACTAGGGGCCAAGCCAACTGGGAGGCTTCAAATGAGAAGGGGTCACAGAGGTCAAGGACAGGAGGGTCCTAATTCTTCCAGGCCAAGGTGATGTGCCAGGCAGAGGGTGGGCCTCAGTCCTGTGGGGATGGCCAGGATGGCCTCGAGGGGCCCAACTATGTCCCTAAAGCATGGGAGAAGCAAGTTTTCTTCTCATAGGGAGGTGGTGGGTACAAAGATATGGAAGGGTCAGGTCCCTGAATCCTGGGCCAGAGAAGACCCCTCAGCCTTGGGGGCATTAGCCAGCCTGGTCTTCTGTCCCCTCCTGGGTTTGGGGTCCTCCTGGCAGCAAGAGGACCTGCGACCCCTCCATGGCTTCATCCACCCGACACCTTATCCTAGCCTTTGGGGGCTGGGGGTGGGTGGGTCAGGAGTGCAGATCTCTGCAGTGAGTGAGAAGCCTGGGATAATGTGGAGGACTCCTGTCCCAAGCTGTTCCCTCCTGCCCCTTCCACAGCAGCTGCCTGGGTTGGCTCATGTAAGGGAGCTGCCCTGCTACCTCGGCGGGCTCCTGGCCCTGCTCCCACCGCCTGGCTTTCTGGGTCCCTGCCAGGTCTCCAGCCCACTGGCCTTGACTCCAGAGCATTCCCCCTCACCCCAGGCCCTTATCTGGCCACCTACCCCTCTCTTCCTCCTCCCTTGCTTCTCTCTTGGTTCCCACCTGAGCCCCTGGCATCTGCCCTGCTCCTGTGCCCGCTGCATGTGCCCGTGAGTTGCGGTGGGTCTGTGCATGTGCGCCTGTATGTGTCGGCAGGCGTGTGTGTTCCTGCCAGTCACTAGCAGTCTCTCCATCTCTGGGTGTCTCTGTCTGACTCTGGCTGGCTCAGCACTGGACCGGCTGGGCGGGGGTGTCAGGGAGACCATTAATCTGCGGTGACAGGCCCGGCTGCTGGCGGAGGGGGAGGGGCTCAGGCTGCGGGAGCGCCGCTGCAGGAGCCTGGGCGGGCTGCGGGGGAGGGGGCCGCTGGCTGGGCACCGGCGGGGCGGGGGAGCCTAGTGTGGCGGGGTGGGGGTGGGGACCTGGTAGAAGGAGGGGCCGGCTGGAGGAGCTGAGGTTCCGAGTGCGGCCGCTGCTGGGCTGGCGGGCGGGCAGAGCACGGCACCCTGGCAGCAGGGCCCACGCCACGGGGCCATGGGCAGCTCGAGCCAGGCAGGCTGCTGCCCACGCTTACTGCCAGGGTGACCCCAGCCCTGGGGCCCAGCCACAACCACCCTGGCTTCATGCCAGGGGCTGCTCTGGTTGCCAGTCGGCCAGCCTCGGGGGTGCAGCCTGGGCTGGGACTGCTGCTGGGGTGCAGGTGAGGCAGTGGCCGGGCCCTCAGGCCCCAGGGCAGGCAGGCTGCAGGGAGCCAAGTCCTCCATGGCGGCCCCAGCCGGGAAGGCGAGCAGGACAGGGGCTCTGCGGCCCAGGGCCCAGAAAGGCCGGGTGAGGCGGGCCGTGCGCATCTCCAGCCTCGTGGCCCAGGAGGTAGGTGACACCCGGTCCTTCCTCTTCTTTCTGGGGCCGGCACACTGAGGCAGGTGGCTGGCCCAAGGGCTCTGACTCCAGGCTGGGGAGAGGGCTGCTGGGAAGTAGGAAGCTTTGGGAGCCGTGGGGCCTGGCCCTGCTCACCCGCGCCTGGCTCCTGTTCTCATTCCCTCCCAGGCTGGGCTTACAGAGTTTCCGTTGCTGGGACTTCCCCGCTCCTGTGCCTGCCATGGCCCACAGTCCTGGAGCTCAAAATGCAAAGTGGGGAGATGACAGGAATGAGATGGGTGCCCAGAGAGATGGTGGGGAGGCGGAGTGGGACAAAGGAGCCCATGGGCAGGACCAGGAGAAGCCGGCAGGCGACAGCTGGGCCTGGCATGGAGGCGCCGGGGCTCCTTTGCTCTGTGTGCTGGGGTTGGACCCTGTGGGCAAAGGAGGCTTGTGCTGTTTTGGGGGGTCGAGGAGGCTGGAATGTGCGGAAGCCACTGTGTGGGTGGTGAGGGCGCGCTGGGCTGAGGCACCTGGCTCATCTCTTCATGGGCAGCCGAGGTGTGGTGGCTGGGCCATGCACTACTCTGTGACCTCCTGGGAGCCATCCAGCCGCTCTTCTGTCAGCCTGGGGCAGGCTTGGGCCGACAGTGGAGGAGGAGTGGGAGGTGGCTCAGGGCTAAGTCTGGGAATCCCATCCCTGCCCCCACCACCCCACATCTGCACATTCTGCCTTGGCTCATACACTCTTTCCAGCTGGGGGACAGGTACAGGTAGGTCTTCCCACCCACAGCTGAGGAGTCAGGGTTTGGCTTAAGCAAGCCAGCTTCAGTATTCTATAGGACAACAGGCTGGGGGGACAGACCTGGCCCAAGGCCATAGGTGAGCTGGTGGCTGCAGAGCTGGGACTGGCCCCTGTCAGGTGTGCCCCATGCACGTGTGAGTTTGTACCCTGGGGCAGTGTTGCTCATGCTGTGTGCAGACTCAGGGGTAGGGTCACTGCTGTTAGGGGTGGTCCTGACACCTCCGCCCAGAGGCTTGACCTCTCAGGCACAGAGAAGAGCCCTGTCCAGGGGCAGCTACCTTCTTCTGCCCCCTTATCAGCAGGGGCCTGGCCAGTGTTTTCTTTTTTTTTTTTCAGTCCCCACTTGATCACTGAAGGGCCACCCACCCATGGGCATTTGCTCTCTGCCTTAAGGAGCTGGGCACTTAGACAGCAGACAGAGCAGAAATGGAGCCTGTGAGCCTGTCCATGTGTTCCCTCCCTGCCCTAGGCCTCAGCTGCTCCCGCAGCCCATCTGGTACCGCTGGAGGCCCTGTGTCCACCCCAGGGTGGTCAAATCTTTGACTATGACCCGTCTTGACTTCTAGTTATTTCCTCTAAGGAGATGTTCTCCCAGCAGCGCCATCTGTGAAGGTGTCTTGGGCAAGCCCAGCTTGAGTATGAAGGGGAGTCTTTGGGACTCATCAACTATGGCCTCCCCAACCCAAAAGCCTGAGGGTGTGGGGGCCTGGGAGTCAGTGCTTCTGGGAGCAGGGCCAGCACCTCTGGAATTCATGGGGGCTGGGCAAGGCCTTGGGTTCAGCTGGCTGCCCAGGGATGGCAGGGAGAGCTTGGGGAGGGGGCTTTTGGGTTGAGCTGCATGCCTGAGAGAGGATTCTAGGGAGACCCAGAAGCTTCTGGGACAGTGTGGAGAAGCTGGCCGGAGCTCTTCTTAGTTTGCCTTGGGAGCAAGAGGGACGTGCCTGCTGTCACCGGGTCCGGATGGCCAGCCTGCCTCTGTCTGATGACTGTGGAGGAGGCAGAGTGTGAGTGTGAGCTGGTACAGGGGCTGTGTGTGTCACTGCTGAGCAGTCCCTGTGTGCACGTCCCTCTGTATAAGTTGGGTGCCATCTCCTCCCAGCTGGGCTATGTCTTCTTTGTCCCTTTGTAAGAGGGTGGGAGGATGAGGACTGTGGGCTGTCCCGGACCTGTGTGGAGAGGGGGCTGAGGGAGCGAGGTGTGCGAGTGGAGGGTGGGAGTGTCTTGGTCTTTCTCCATCCTGGTTGCCTGGTGTCCTCGGGCCTGTGGCATGAAGAGGGGCTGGTAAGAACTGCAGTGACTACCAGTCAGTGGATTGGGGCTATGGCTCCTGGGGCCACTGCCCAGGTTGGGAGCTGTTGTCCTTGGAACCCTTTCCGGTCTGAGACTATGGCGTGTGTGGTTGGGTGTGTGGGCCAGCGTCTCAGGGCAGTCACAGTGGCAGGTCTGCATCTGCATTGCCGGCGGGGAGCAGCACTGGGTGTTCCTGCCGAGTGGCCTGAATCCACGTCTGCCGGGAAATGTTGGAACTGTTTGGAGCCAGTCCTGTGCTGTGTGGCATTTTGGGAACCATGATGCCCAAACCTGGGGGTGGCCATTTGCTGTGGTCGCTTGGCTGAGGGGTGGGCATTCTGATGGAAGCTTTTTTTGGCCTCCTCCTCATTCTGCTTGGCCCCGGCAGAGATGTCATCGCTCCTGCCCCCGAGGTCCCATGGCCTGCCTCACCCACACCTCCGCCTTCCCCGGGTGCAG
Seq C2 exon
GTCCTGTCCCTGGGCGCCGACGTGCTGCCTGAGTACAAGCTGCAGGCACCGCGCATCCACCGCTGGACCATCCTGCATTACAGCCCCTTCAAGGCCGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCTGTCTTCACACCCTACTCGGCTGCCTTCCTGCTGAAGGAGACGGAAGAAGGCCCGCCTGCTACCGAGTGTGGCTACGCCTGCCAGCCGCTGGCTGTGGTGGACCTCATCGTGGACATCATGTTCATTGTGGACATCCTCATCAACTTCCGCACCACCTACGTCAATGCCAACGAGGAGGTGGTCAGCCACCCCGGCCGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCCGCCATCCCCTTCGACCTGCTCATCTTCGGCTCTGGCTCTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055118:ENST00000262186:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(31.6=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development