BtaINT0079619 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34022538-34028159:+
Coord C1 exon
chr2:34022538-34022966
Coord A exon
chr2:34022967-34028138
Coord C2 exon
chr2:34028139-34028159
Length
5172 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCCTTACGTGCTCAAAACAGACA
3' ss Score
5.79
Exon sequences
Seq C1 exon
GGAAACTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCTTTACCACAAGAAGATCCTGATGTGGTAGTGATTGAGTCATCTAAACACAGTGATGACTCCGTAGCCATGAAGCACTTAAAGTCTCCAACAAAAGAAAGCTGCAGCCCCTCGGAAGCAGACGACACAAAAGCCTTGATACAACCCAGCAAATGTTCCCCCTTGGTGAATATCTCTGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGACTCATTCCAGATCAAAGGAAAGCATTTGTAGTATACGGAGGGCTTCCTCGGTTCATGATATAGAAGGATTCAGTGTCCATCCCAAGAACATATTTAGAGATCGACACGCCAGTGAAG
Seq A exon
GTATGTTAGTAATTTTTTTAATATGGAAACTTATATTAAGGGGTAAGGAAAGATAATTTCTGTATTGTGTTTAATTTCAACATTAATTCTTATACTTGTGAAAAAGAAATGTGAGTAGAATCTATTAAAAATATCAGTTCTACAGAATTGTTACTGATTTCCTCCTTGAATCCTAGTGACTTTTTTCTTTTCTGGCGTCTTTATCTGAGGTAGAATGATAACTATTATCTGCTTATTTTATGGAGTGTTAAATAACTAATGCTTAACATAAGATCTGTTTAGGTGATAACACTATTATCTCAAACATAATGCATTGTGCTGCATTTAGTAAATAGTCAAGAACTGGTCAAAAAGAGTGGTGCGTGATCATAGGACTATTTTACTGACCATTTCTTTCCAAAAGGAAAAGGTGTATAAAATATGATATACTGAGTGATAAGAAAGCTATACACTAATTGGGGGCAGGGAGGAGATAGGAAGGGGGAAGGGGCTCAACCAGAAGCAACATGAAATGCAAAGTCAAAATTCATTATTTCTCTCTGCCCTCTTCAGGACAACAAAAACAACTCATCATTAACATGATAATGATAATATTTGTTGAGTATTTACATGTGTGAGGCGCACACATTAACATTAACTCATTTAATTCTTATAATAACCTTATGAATTAAAATCTGTTATTAAGTCCAGGATTTAATAGATGAGGAAACTAAGACCTAGAGGCATTCCTGGTGGCTCAAGAATCTGCCAGCCAATGCGGGAGACAAAACAGACTAGGGTTCAATCCCTGCATCAGGATGTCAGGAAGCTTCCCTGGAGGAGGGCACGGCAATTCACTCTAGTATTCTTACTTGGAGAATCTCATGGACAGAGGAGCCTGGTGGGCTACAGTCCAAGGGGTTGCAAAGAGTTGAACACAACTGAAGTGACTTAGCACACAAAGCTTAGATATGTTACATAAATATCTGGTCCTAGGTTATGAAGTGCCAGAAAGTGTTAGTCGCTCAGTCATGCCTGACTCTTTGCAGCCCCATGGACTGTAGCTTCTCAGGCTCTTCTGTCCATGTAATTCTTCAAGCAAGAATACTGGAGCGGGTAGCCATTCCCTTTTCTAGGAGATCTTCCCGACCCAAGGATTGAACCCAGTTCTCCTGCATTGCAGGCGCATTCTTCACCATCTTAGCCACCAGGGAAGCCCTTTCAAACCGAGGACTGGTCGCCAGAATCCACAAGCCATTCATTCAATGTTGTTCTTCTTTGATGCGTGCTTCACGAAACCTTACTGCAAGGAAATGTTGAATCACTGAAACTTCTCCAGGGAGGTCCAAGGTTCAGGGTACCTGTCATTGTCTGTGCATGTGTTGGAAAAAATTTCCAGACATAAGGCAAAATGAGAGGAGAATAAAGTTTATTAGAGTGGAAGACACTATTAGAACAGTGGGTGGCTCAAGGGAAAGCCAAACCCTTTCACAGCTGGGCAGTCAATTTTTGTAGTCTCAAGACAGAGAAAGTTTCTACTGGAATGGTGGCATTAGGTGATCGGCCAGGATGATACAAGGCAGATAATAGGATGGGCACTTTACCTAATTTGGAGTCATGGAACTGGCTGGTTTTGATCCAGAGATTCATGGCAACAGATGCTTGGTCAGTTCCAGAGATTTTTAACCTCTGACTTTGGTACAGGGCTCCAGACCTGTGACCTTGGTATAGGGCTCCACAGTACCCATTGCACGGATGCATTAGTCTCACTTTCTACAGATTTGGGTTCTGGAGAGGCCCACTGTCCTCTCTGTGGTATTTATTCCTGTGAGCACCCGTCATCATCCATGCTGCCACTGGTTTTCTCTTTTAAACATAAAAGACCATGGGGCTCCTTAGTGTAGGGTACTGGACACTTACCCAGCTGTCCATCGGTTTTTCAAGCTTCATTTCTAGCCCCTGCAGGATTTCCTCCCCTTCTAAATTCTAAACCTGAACAAAAATAATCACCATTTCCCAAAAATATCTCATGCATTTTCTTCCTTCATTGCTTTGTTATGCTGGGAATACTCATGCGCACTTTGTCCCTCCTCACACTACTACTCATAGCCATAAGGATCCGTTTCTCCTTTCCAAACCAGAATTAAATGGTTTCATACCTAAGTGTGTAAAACAGTGTTTACATATATGATAGCATTTCTTCTTATTATTTCTTATTGTTCTACATTTATTCCACATTTTATATCTTTCAATGCTATTAGATATACACACAAATAATGATATTGTTGAGAGGTTCTCTAGTGCTGGAATTCTAGCATGCTTGGCTCCATGGCTTTGGTTTCAAGCACAGTCACCTATTTCATGGCAAGAACTCAATAAGCATTGAGGTGACTTTAAGAGCATCATGCTCATGAATTTTGTTACAGAATCATACACACCAGGCAATAATGAGTTATCTGTTCATTAGTACTCTGCAATTTAAACAAAAATCATAGGATTGAATCATGTGAGGGATCTCTATTTAAAGAGTGCAGTGAAGTAGAGAAGACAGAAGAGATGAAAGAAAATGAATTAACAAGAAAAAATTCAAAGAGAGATAAATCAGTATCACAGAAATAAAAAGAACAGTTTTCTATAAGATGGATTTGATATGGTACAAGAGCAATTAGCGCATCTCTTTTATTCTCTGGTCCAAAGAAAGTCAAAAGGAAAAAGGAAAATAAAGTCAAGAACAATTTTCAAACCAGATTGTCTAAAACTTTGTATCATCTAGTCACATCATGCTCATTATCTCCTGACTAAAAGAAACTTCTGAAATTTAGTCTTTAAGCAATGGATCCTATAGCTGAACAACAGTAAATCCAATATAATAATTCAAATGTCCAGCATATATTTTAGTTAGTCAGTCCACTGAGTGTAGTCTTCTTTAGCAAACATACTGACTTTTCGGAGACTGGCCTTATTGCCTAGAACCTGAGTTACAGTGCAGTAACATTCAGAAACAATATTAAATGATGCATATTCTGTGCATGGTACAGACTTAACCTGTGTTTTGACAGCGGTACTAAGTTAGATCAGATTTCATGATTTAACTTTATTGTTTTCAATTTTATGTAGTCTCCATTTAGCACACAGTTACTGATGCAATTATGGGAAAAGGATGTGTTAGTATTTTGGGTTTCTCAGTTCAGGTTCTATGTATGGACAGGATGGACAATTGAGATCATCCTCAATTTTTCTTCTCCCACCCAAGCTATGTTATTTTCAAAAACGGTATCATTTTTTTACAGTTGCTAAAGTCAGCTTCTGACTACCAATTGATAATTCAGAAGGTATTTTGTACTACACCATTAGAGCAATTTTAGATACAAAATCTCTAAGTAGTATAGAAGAAACTACAGTTCCTAAAGCTTTATAATTTAATATGCTTTAGAAACTGAGGCACTGATGGGAGATGGAAAGCTTTTAAAACTGATTTTAATTTTATGACTATATAATTATTTAATGGTTTCAATTGTTGTCTCTTCACTTAAGAAGAAAAGTCCCTCCTATATAGGTTATTTTATAGAACTTGAAATAATTTGCGAATATATCAGTGCATATTATTTAACATTATCTTTTCACCTAATCTAAATTACCAAATACCTTAGAACCAACTCAAACCATTTGTGGTGAAGGACCAAAATTTTTTGGTTTTGTTTTTCTATCTACCACATACCAACCAATATATTTGTAAATACAGTAATAATGCATTATATGGAAAAATGAAAATCTAAAAAATAGGCATAAAAATATAAGCTCCAATTCTTGTATTATTAAATTGAACAGATGTAAAAGTATTTTCTGTCAAACTGCTACAAGACTCTAAATGCTTACTCTAATCTTTGCACTTACACTGTCATGGAGGAGTAACAAGCACCGGCTCCAAGACCACATGCTTTGTTTCAGAATGTCAGTGCAGCATTAACTGTATAATATCACTTTGGGGCAGTTGTCTTTGGAACTTACAGTTCTTTACATGTAATTTCCAGGTTGATGAATAGAGTTATACTGTTTAACTACTTGCTCGCAAGCAGTTATTACTTTCCTAATGATTGTTGAGCCCAACTTCTGATGGAGATAATTAATTCCTTGTAATCAAAGTCTCTTCCATTAGCCCTATTTGCTTCTTATAGTCCCTCAAAGAGGGCAGAGCATTGACATATAAGGTCATTATTTTATTTGTGCATCTCTGTGTGAGATAATGTCTATGACAATTCAGTATACCACACTATTGAAATTGCTTCAGTTGGTGAATTTGAAACAATTATGATATATCCCAAGATTTTAAACATGAATAGCATTAGCATATGTGTTGACAATATATTTTTCAAATCTTGGTTATATTTGAAAGTTCCTAACATGATGTCATTAATATTAAGCTTCTTTGTTTCAAAACTAGTAATGAATATTTTGTTAGTAGCAATATATAACACTGTCAGATTGCTATTCTCAAAATAAATCTGAAAACACTCCATTTTGAAATTTGAAAACAAACCCATTATAATATAAGCAAATTTCCTAAAATTTCTAGGTATTACATTGAGTGTATTGTGGACAGCATAAATTTTTAAATCTCACATTACCTTTAAACAGTCGAATCTTTCACTGATTTCTTATAATTATTTTTGCCTAAGAATGGCTCTTAGAGTGCTGTTTCATATTTTCAAAATATACACTGAAGAGCATTTGTGAGATGGATTGTTCATAAAATTGTGATTAATAATTCAAGTTGGTTTATTAAACCATTGTCTAAGAACCATTTTTTATTAACACACTAATTTATAATGAAAAACATTACTTAACATACAAAATGCTGTGTAGTTCTTTGTAAGTGGTGGCTGAAGCTACACTAAAATTGACTTCTGACAATGTTGAAAGTTTTTATCCCAACTCTAGGCATATAGATACAGCTTTCTCCAAATAGTGAGATTAATGTTTCACGTATTTGAACACAGATGCTTATGATGGCAGATATTATTTTTAGCATATGCATCTTCCTTGGTTGAAGAATACAGAATGTTAATTTCAAAGATACATTTTCAATCATTGCATCCTATTTTCTCTGATTGTTGTTACAGAGGTTATTCAGTGCATATAACATAATTTTAGTCTTCATATTTCTCTCTTTTTTTCCTTACGTGCTCAAAACAG
Seq C2 exon
ACAATGGTCGCAATGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899:ENSBTAT00000002469:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]