GgaINT0048086 @ galGal3
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22501893-22508931:+
Coord C1 exon
chr7:22501893-22502321
Coord A exon
chr7:22502322-22508910
Coord C2 exon
chr7:22508911-22508931
Length
6589 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTATTATGCTGAAAACCAGACA
3' ss Score
1.06
Exon sequences
Seq C1 exon
GCAAACTTTTTGGGTTCCGGTTACCTGGATTGAGACTTTTAACATATAGAAAACAGTCCTTACCACAAGAGGATCCCGATGCAGTGATAATCGACTCATCTAAGCACAGTGATGACTCAGTGGCTATGAAGCACTTTAAATCACCTACAAAAGAAAGTTGTAGTCCTTCAGAAGTGGATGACACAAAAGCACTGATTCAACCAAGTGAAGGTTCACCTTTGGTTAATATATCAGGACCTCTCGACCATTCATCACCTAAGCAGCAATGGGACAGACTTTACCCAGACATGATACAGACAAGCAATCCACTAACCCATTCCAGATCAAAGGAAAGCATATGTAGCATACGGAGAGCATCTTCAGTACATGACATAGAAGGATTTAACGTCCACCCGAAGAACATTTTTAGGGACCGTCATGCAAGTGAAG
Seq A exon
GTATGGTAGAAAAATCAAGTCAATATTCTGTGTTTTATTAAGAAAGAATTTCACGATTTTTCACAGTAATTACCAGTTTGTAAGCAAAACTACATATATTCATCTATAGACATTCAAAATCAAAATCACAATATTAAGGGAGAAAAATAAACCAGCTTTTTTTTTTAAACTCTAAATACTGCTTTTCATGTCTAAGCAGACCAATGAAGTTGCTCTTAGACCACCATCTGCCTTCTGTACAAGAAAACAGCAAAATTAGGCCAAACATCTGTAAAACTAATATTTGTACTTGAGGGGAAAAACGATTCAGACAATTAAGCCAGAACTGCATGCATAGTTCTGTCCCCATGCTCACATATCGCTCTAATCATATGGAATCCTACTTCAGAGATGGAACAGGTTTTTGTGTGGTTTTTTTTTAATCTCTCGTGCATATTGTATATACACTAACCCAAAACTAATGCTTTTTCTTACACAATGGAGAATAATCCCCTCAGTAACTCCAGAGAAAGGCTTGATGGAATGTCTAGTGAAATACTTAAAATTTATATCAAGCAGCTCCATAAGTGCAAAGTACCCCATGCAAAGTCACGGAGCACAGCCCACGGTTTCTTTATGTTGAAGAATGGAATGATTAGGAACTTAGGAAACAGAGGTTTTGAAACCCTGTGAATGGAAAAGTACTTTGTAACTGACTTCCACAGAAAACTGCCAAATACTTTTGTAGATACAAGTGACTTGTGTAATTTTTATTCAAGTTCGATGGCAAGTAACATATGTAGAATATTTTAAGAATTCAGAACCATGTGAATCTGTACTCAGTCTTTCATGACATAAGAAAATGAGTTTTTGTTTTCCACGATAGCTCATTTTTCACCTATTCATTGACTCCAAGTGCAAAATCTACTTAAGTTCTCCTGCATTTTGGAAGGTATGGAGCAAGGTTTCTGCTTCCATACACCTCCTAAAACGTTAGTCTGAGTGTTCCACCCCCACTCAGGCTAATTCCTACAATAGCAGAAGTGATTCTTCCTTATACTACTCCTGTATTAAATATGAGAAATGTTTGGTTTTATTTTTTCAGAATCATTTTTTGCTTCTCTTATACTCCAATTTTTTCAGCACAAGTGAACCTGAAAATTCAGTTAAATCTATTCCAAACCGTGCCATTTTGATGTATTTCATTTTCACATTCAAGCCAAGATTTCAAGATTAGGATCTGGAGCCAAAGACACCAATGTTTAGGCATGTCTTTTGAAGTGTTACAAATGTTTCATTTTGGTTTTAACTACCCCAAATCTAAACCAACATTTCAAATAAAACACGTTTAAAGATATCTATTTTGTCAGTTTCTATTTACAAAACTTATTCTGATTAAAGCACTTCACAGATGGTTCTTAAGATGTGTAAAAATCAAGTTTGATTACTAAGTTTTATTGGTTATAATAGCATAAAGCTAATGCAGAAACAGCCAAACAATTTAATATTGACTGCAGGGAAGCACAAAACATTTCTAGCTCCATTTCCCTGAGTAGCATTTTTCAAGTTTCAGATACTAAGAACAAGTGATTTTACTGTGAGAAGCAGATAACACATTCAAATTCCTCTGACATCTTACTTCATAATAGCGTAAACAGATAAAACNNNNNNNNNNGAATTCTCTTTCAAAAGTACTGCAGACAAATTCACAGAAGAAAGTTGCATCAAACATTGATGATCTGGGCTCAAAACAATCTGTGGATCAAAAGATTTCTCGACTACCAACATCCAGAAACTGAATAAACAAACTAGAAGAAAAAAATTCACAACTGAGTTGTTCTTAAATTCCTTCTCCACTCATCCACATTCAGAAACTATCAGAGTTCCTACACTACAAATCCTACCTCCTCAGTGGCCTTCAGTATAGCAACTTCAGGCTTTATACAGCTTTTCTTTTAAGAGCCAGGCATTCTCACTTTTATTCACTCAGAATTCAAGTTTAATTCAATAATATAGATATAGCACACTCTAAAATGTTAAATGACCAAGCTGTGATCAACTGTGTTGTATTAACTTATGTACAGGCATCAGTAAATGATTATCTCAAAACACTTCAGTAAGAAGTGAAAAAAATCTCAGTGCTAAATATTAATGAATATTAGCTAGCTTCAAAGAGTGGTAAAACTAACCAAATAGAATGAGATCTTATCCCAACAGAATTTGTTATTAGCTTCTTAATAAGAAGGAACAGCAAGACAATTTGTGATGTTCTCCAATAAAGCATGCTCATAGTGGAAAACAATCACATCGCAGAATGATAAGTGACAAAAAGCAATTAGTTAATGTTGATGAAATGACATCTGATCCATTCTGTTACTTTGTTTTGCTACTATTTCTTTATAATTTCTTCCATATTTTACTGTGTTTTCTGTGCATTAGAAGTCCTAGTGCCTCCATCTGAGTTATATTAAGCAGTGTTTGAATATTCACTGCCTGGATTTGTTTGGTTGTTTATTCTTTAAGGGAATGATCTAAGAAAACTTCATATTTCTCCCCCTGTATTTTCTCAACCTATAGCATTTTATTTGAATTTTACAATTACTCTCAACTACCACTATTTCTTACTGCCACAAAATATTCTTCACTTTACATGCACTCAGCATAGTCTACCACATCATTTAATGTACCAAGCCCAACTAAGCCTACATCCACAAAAAAAGCACAAAAATGCATGTACTGTATGAGTGCAACAGAGGGTTGGAAGCTGTGTCATTCAAAATAAGTATTTCATTTAAATATAAAATATAGGTGTTGAAAACAATAACAACAAAACTAATGCACAACTTATTTTTCATAAGAATTAGCCCTGGTAACTTCATGTTACATTTGTAGCCAATGAATCAATAAATCAGCATCACAGTTTTAAACAAGGAATTCCACAAGTAATAAGATCCACAAATACCTATTTCAGGATACAGCTACAAAGCAAAGTAGTTCAGTGCGTTACAGCAGCCTTATACAGTTACAGCAGATTTAAGCCAGAAAGAACCATCAGAATAGATAACCATAGTCAACGCTTATTCATTCTCCAGGCTCATTAGCTTAGATTTAACTGAAATATGAAGTCCTCTAACAGGACTTTAACCTGGAATTTAACAGTCCTCCATATTATTTACACATCCAATGCNNNNNNNNNNGGAGATAAACTAAACCAGCTTTTTTTTTAAACTCTAATATATGCTTTCAATGTACTAAGCAGACCAATGAAGTTGCTCTTAGACCACCATCTGCCTTCTGTACAAGAAAACAGCAAAATTAGGCCAAACATCTGTAAAACTAATATTTGTACTTGAGGGGAAAAACGATTCAGACAATTAAGCCAGAACTGCATGCATAGTTCTGTCCCCATGCTCACATATCGCTCTAATCATATGGAATCCTACTTCAGAGATGGAACAGGTTTGTGTGTGTTTTTTTTAATCTCTCGTGCATATTGTATATACACTAACCCAAAACTAATGCTTTTTCTTACACAATGGAGAATAATCCCCTCAGTAACTCCAGAGAAAGGCTTGATGGAATGTCTAGTGAAATACTTAAAATTTATATCAAGCAGCTCCATAAGTGCAAAGTACCCCATGCAAAGTCACGGAGCACAACCCACGGTTTCTTTATGTTGAAGAATGGAATGATTAGGAACTTAGGAAACAGAGGTTTTGAAACCCTGTGAATGGAAAAGTACTTTGTAACTGACTTCCACAGAAAACTGCCAAATACTTTTGTAGATACAAGTGACTTGTGTAATTTTTATTCAAGTTCGATGGCAAGTAACATATGTAGAATATTTTAAGAATTCAGAACCATGTGAATCTGTACTCAGTCTTTCATGACATAAGAAAATGAGTTTTTGTTTTCCACGATAGCTCATTTTTCACCTATTCATTGTCTCCAAGTGCAAAATCTACTTAAGTTCTCCTGCATTTTGGAAGGTATGGAGCAAGGTTTCTGCTTCCATACACCTCCTAAAACGTTAGTCTGAGTGTTCCACCCCCACTCAGGCTAATTCCTACAATAGCAGAAGTGATTCTTTCTTATACTACTCCTGTATTAAATATGAGAAATGTTTGGTTTTATTTTTTCAGAATCGTTTTTTGCTTCTCTTATACTCCCAATTTTTTCAGCACAAGTGAACCTGAAAATTCAGTTAAATCTATTCCAAACCGTGCCATTTTGATGCATTTCATTTTCACATTCAAGCCAAGATTTCAAGATTAGGATCTGGAGCCAAAGACACCAATGTTTAGGCATGTCTTTTGAAGTGTTACAAATGTTTCATTTTGGTTTTAACTACCCCAAATCTAAACCAACATTTCAAATAAAAAACGTTTAAAGATATCTATTTTGTCAGTTTCTATTTACAAAACTTATTCTGATTAAAGCACTTCACAGATGGTTCTTAAGATGTGTAAAAATCAAGTTTGATTACTAAGTTTTATTGGTTATAATAGCATAGAGTTCATGCAGAAAGAGCCAAACAATTTAATATTGACTGCAGGGAAGCACAAAAGATTTCTAGCTCCATTTCCCTGAGTAGCATTTTTCAAGTTTTAGATACTAAGAACAAGTGATTTTACTGTGAGAAGCAGAGAACACATTCAAATTCCTCTGACATCTTACTTCATAATAGTGTAAACAGATAAAACAACGTCATCCGATTTTACTTTCCATAAGCTACAAAACAATAGCGAATCTGTCCCTCCATTTAGGCCATACATACACACTCTAAAAAAAGTACAACAGAAGAGAGAACAGTTCTCAGTATTCCATTAGAATTATCAACCATTCCTGATGTTATCTTCTCCTAATTGCGTTTGGACTTGGCTGAAAGAATTTAAATTTCACTAGAAAGTCTCGTGCCGCATGCCTTAGCCAACAGCAGGCTGTAAACTCCCACCGATGTTTTCAAATGATCTATATAAACCCGTGTAACGCCATAGAAAGCACAGGAACAACAGCAGAGCAGCAAGGTCCTAAGTCACAGCAAGGGAGGACTTGCTCAAATACAACAGCCATAGGCACAGACATAAAAAGGAGAAGCTACTTACCTTCAGAAATCCCCAGAAACCTCAAGAGATGCTCAAGCCTCTACTGCCAACCCTTAAATGAGGTCTAGGAAGGGGTGGATCCTGGCTCCACCCCTTCTGGTCACTCAGTGTATTGCATGCACCTGAGCTCCCTTGGATTGGCCCTGCCTTTCCACCAGGTGCTCAATCACTGGTTCAAGTCCTGACTTAGCATTTCTCTTACATCAGGCAACCAAGATTCAGCCTAAATCCTCTTCTCTGGACTACAGATTCTGAGCAGAAGCTGTAGATACTGTACTGAAGAAAGTAAAATCCTAATTACTTACAGTATGTAAAAGTAAACTTCAGTCCTAATGTGGTATAGCAGCAATCATGCACTAAAAGGTAATACATTAAAAATGACAATTTAGGATTGTAAGTTCATTTTTGGGCATACTCAGTTGAATTCCATCCTAAAGTTACCTGTTTGACAGCAAAAGCAGCAGGGCAGGAACTGTATTCCACCAAACTCTAGCCAAACCCTTCTCATCTGAAGCATCAGCAAGCCAGATTTTGTAGGCGGGTACACAGATGCACATCAGGAATTTTGTTGTTTTCAGAAGGGTCCTCAGCCACTCCTGCAGTCTTCGAATTTCTTTGAGTTGGATCTCCAAAGCAGGTGACAATGGCTGGTGGCACACAGGGACACAGCTGTGTCCTGGGCCTGCGTTCCCGCCAATCTCGGGGCCCTCACACGCTCACCGAGCCCCTGCAGCCAGGCATGGTGGGCTGCACAAAGGGACGGCAGCCTGGGGGTCATGTACATCCCTGAGAAGGTAGGGTGGTTACTGTCCACTTGTGTGACTTCTTTAAATAACAATTATATGGTTTGATCTCAGGTGAAGGTTCAGGGATGAAGGTGCCTGTGAGGAGCAGGTGTACCTCATGAAGATAGCTTCTCTGCTGTTATTTCTCGCAAACGTACCCGTGTGCTGAAAAAAGGTCTAAGGCTCATCTTTCTCCTCAGTAGTTCCCCAGTACCCAGTGGGAAAAGGACAGTGCTCAGCTTGCTGCTATGTTAAAAGCAGTTCTGGGAGACATAACTCCTCCTGTGAGGACTGGGAAGGTGTGGGGTGTGTGTGAGGCCGCCCACGCAGCCCCTGCTGCTGGCCTGGGCTGCCCTCAGCTGTGAGTGCTTCAGTCTGGCTTAATTGCATTTGACTAGTTGCTGCCTTGTGGGTTAGATCTTTGGATTTCCAACCCAGCACAGGACTTGTGGAGAAACTATGTTGTTTTGCTGTTAAAGCAAGTTAGAGCCAATCCTACTCGTTTTTGCAGCTCGTGCTGATCAATTCCAAACTGTTTTACAAGCTGTTCTTTGACTGCCAAAGTGACTTCATCTTGCCTAAAACTTCGCATAATATAATCACTTTAATTCCAGCCACATATATTTTGAAGCAATGTTTTCTGCTTTTTTTTTTTTTTGACGTAGATTTTAGTTGTCTTTTTTCTCTCTTTTTCTTTGCTTTTATTATGCTGAAAACCAG
Seq C2 exon
ACAATGGTCGCAATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]