HsaINT0084381 @ hg19
Intron Retention
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:HGNC Symbol;Acc:18863]
Coordinates
chr2:163369164-163374668:-
Coord C1 exon
chr2:163374240-163374668
Coord A exon
chr2:163369185-163374239
Coord C2 exon
chr2:163369164-163369184
Length
5055 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCCTTATGTGCTCAAAACAGACA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GGAAATTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCCTTACCACAAGAAGACCCCGATGTGGTGGTCATCGATTCATCTAAACACAGTGATGATTCAGTAGCCATGAAGCATTTTAAGTCTCCTACAAAAGAAAGCTGCAGCCCCTCTGAAGCAGATGACACAAAAGCTTTGATACAGCCCAGCAAATGTTCTCCCTTGGTGAATATATCCGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGTCCCATTCCAGATCAAGGGAAAGCTTATGTAGTATACGGAGAGCATCTTCGGTCCATGATATAGAAGGATTCGGCGTCCACCCCAAGAACATATTTAGAGACCGACATGCCAGCGAAG
Seq A exon
GTATGTTTGATTTTTTTTTAAATGGAAACATATATTAATGGGTAATAAATGATTATTTGCATATTGTTTGAAATTTCAACAATAATCTCTGTGCATTGGGGAAAGAAATGTGATTAAAGGCTATTAAAAACCTGAGTCCTACACTCAGAGTTGTTACTGATTTCCTCTTTGAACCCTTGTGAGTAATTTAGTGTCTTCTGGCTTCTTTATCTGTATTTCTGAAATAGTATGATAACCATTATCTGCCTACCACATGGAGTGTTAATTAATTAATGCTTATTATAACATGTGCTTAGGTAATGAACACTATCATCTCAAGCATAGTTAATTTTGCTGCATTTAGCAAATGATCATGCCCTGGGAAGAAAGAATTTGTGCCATCAGAGGGCTAGTTCATTGACCGACTCTTTCCAAAGGGAGCAGCATAGGAACTGTGATGTACTGAGTGATCAGAAAGCTGTAAGCTGACAGGGGTGCAAGGTAGGTAGGATGAAGGGGAAAAATTTAAAGGGAAAAAAATCCTGAAAGTCCTGATCTCAACAAAAATCGACTTGAAAAGCAAATCAGAATTTATTCTCCCTGGCCTCTTTGAACATTATGTTCACATTCTTACATTAGCCAGTAGTGAAATTAAGGATCCTTAAAAAAAGCAGTGGCAGAAACTATTTATCATGAACATGGTAATTGATAACATCGGTTAAGTACTTACTGTGTCTGAGGCAATGTAAGTGCTTGATACACATTGTCTCATTTTACTCTCATAAGAAACCCAAATTAGGAATCATTTCTAAGCCCTATTTAGTAAGTGAGGAAACAGAGGCTTAACTATGTTAAATAAATAACATAAATAACTAGACTAAGGTTACAGAGCTAGTCAGTGTCAGAGCCCGGCTTCAAACTCAGGACTGCCTGTCTCCATAGTCTACAATCAAATCCATGCAATCTTTTTCCTCCCTCACTCCTGCTCCTCCATGAAACCTTGCCATAGGAGGAGTCTGTTGAAACTCTTGACTTTCCCCAGGGAGTCCAAGAATCAAAGTTCCTGGCATGGGTACATCAGACCCGCTTTCCAGATTCCCATAGATTTGGTTCTTGAGAGACCTGCTGTCCAGGCTACTGCTAGTTTTGTCTTTAAAACATTAATTCTTAATGTGAGGTGTTAGGCACTTTGTCAGCTGATCACACTTATTTTTCTAGCCTCATTTCTAGCCCCAGCAAGACTCCCCTCCCTATTACATACTCTATTCTACATCTGCACAGATATAATTTGCCTTTTCCCAAAAATGTAACACGTGTTTTCTTGCTTCATTACTTTGTTATTCCTGGAATACTCTTCCCTGCTTTGTCTCTCCTTACACTACCACTCAGCAGCAGGGACCCATTTCCCCCTTCCCAAACCAGAAGAATTAAATCATTTCACACTCGAGTGTGCAAACCAATATTTACATATAGTGTAGCATGGATTGCATTTTATATTTATTGTGTATTATATGTCTGTCATTCTTGTCAGATATGTAAGCAAGCAATTATGTTGCTGTGAGCGCCTCCAGCATAGGCACTCTGGCATAGTGAGCTCTGCACCCTTAGTTTCTAGCACAATTGTCTACTTCATGGCAGATACGCGATAAATATTGGTGTAACATTGAGAAGACCATGTGATGTTGAGGGGACTGTGCTTGCGAGTTCTGTTTCAAAATCATGCAGATCAGAAAATAATGAGTTATCTGCTCCATCATACTCTGAAGTTAAACGAAGTCTTAGGAGTAAATCATATAGAGGATCTTTATCTAAAGGACACCATGAAGTAGAGAAGGCAGAAGAGGTGAAAGGAAGAGTTGGCAGGAAGAAGTTCAAAGAAAGATAAATCAATAGCTCAGAAAAAGATACAAGAGCAATTAGCACATCTATTTTAATCTGTGGGCCAAAGAAGGTCAAAAGGAAAAAAGAAAATACAAGGCCAATTCCCAAATTGGATAATCATCTAAGGCCATATCCCATTTAGTAATGGCAGGCTCAATATTTCCTGACAGAATGAAACCGCTAGAATTTGATCTTTGATCAGTGAGTCCTGTGGCTAAACAGCAACAATAAATTCAATATGGTAATTCAAATGACCAGCATATGTTTTAGTGAGTTTAGTTAGTGTAGTCACTTTTAGCAATCATACTGACTTTTCAGAAATTGCCTTTTCAGAGATTCCCTAGAGAGATCCTGACTTATAACAGTAGTATAGTAAAATTCAAAAACAACAAATTTGAAAATCAAACTGATACATAATCAGTGCATTTTACTGACTTAGCCTGTGTTTGGACAGTGGTGCTGAGTAGTTTAGATTAGATTTCTTGATTTAACTTCATTGTTTTTAATTTATATGATATCCATTTAGTGCACAGTTACTGATACAATTATGAGAAAGAATGATTTAATATTTTTGGATTTCTCAGTACGGGTGCTATACATAAACATTTGGTGCTAAGATCATCCTCGATTTTTCCCCCTCACCCAAAGTAAGCTGTTATAAAAAAAAATTACTTTCTTACAGATTATGCTAGAGTCAACATGTGACTATAGATTGATAAATTCAGAGGGTATTTTCTACTTCATCTTTAAAGAAATTTTAGCTACAAAATCACTGATTAGCAAAAAAGAAACTACATTCCCTAAGACTTTATAATTTGGTATATTTTAGAAATAGAGCCATTGATAAGGAAAGATGGAAAACTTTTAGAAGTGATTTTAGTTTTATGAATTCATGTAACTGATTAACAGGTGAAATCATGCACAAGATTTCGAAGTTGGGTTGTTGTCTCCTCATTGAAATAAATAAAAATGTTCTCCTGTACAGGCTATCTTCACAGAACTTTAAATATTTTGCAGATATATTAATGAATAATATTTTACCTTATCCTCTCATTTAATCCACATTATCAAGAACCTTAGAACCATACTTTTCAAACCATCTTTGATGAAGAACCAGAATTTTGTTTTCTAATTCATCACTGACCAATACATTTGTGAAGCCAATAAAAATGTACTACTGGAAAAATAAAATGTAAAAAATAGACATAAAATATAAACCCCAATTGTTTTATTATTAGATTAATCAGACATGAAATTACTCTGCCAAACTGCTACAAAAGATTCTAAATATTTACTCCAATTTCTGTACTTGCATTGTCATGGAAGAATAACAAGCAGATCTCAGCTAAGACCAGTGCACAAGCCACACTCTGCCTTGGAAGGTCAAAGCTGTAATAACTATATAATGTAATGTTTTGTTAGTTTTCTTGGAATTGGTAAATCTTTACATATAATTTTTAGGTTTGATAAGTACAGTTATAATTTATAACTACTTGCAAGCAGTTGTTACTTTACTAATGGTTTTTGGACCCAGCTTCTGACAGACACATTCATTCTGAGTAATCAAGATCTCTTCCACTATCTCTATTTGTTTCTTGTAATTCTCTCAAAGAGGAAAGGGAGTTGTCATCTAAGGCCACAGTTTTATTTGTATATCTTTGTCCAATGCAATGTCTACGAGCAATTCAATATATCACATTATTAGAATTATTTCAGTTGTAAGCTTTGAAATTATTATGATATATCCCAAGATTTTAAATGGGCACAGTGTTAGCATAGATATCAACAAAATGCTGAACAGATTTTTCAAATCTTGGATATATTTGAATGGTTTTGATATGACAGTGACGTTTATTTTAAGCAAGTGTGTTTCATAGCTAGTAATGCATATTTTGTTAGTGGCAAGTATGCAACATTTAGATAGCTGATCTCAAAGTAAATCTGAAAATATTTAACTTAGATTTTAAAAGAGCCCATTTTATTACAAATAAAATTTTTCAATATTCTAGTAATTACACTGAATTCATTGTGACAACATTAACAAAAATGTTTACATTTTTTAAAACAATCTAATCTTTCATTTACTTCTTGCAATTATTTTTGCCTAAGAATGACTCTTTGAGTTATATTTGCTATTTTTAAAATATATATTGAAGTACATTTGGAGGAGGGCAGTTAATAAAATTGTGATTAATAATGTAAGTTGGAGCTAGGCAGAGTGGAGCCAGGCAGACTGGTGTGGTTGTAGTCCCAGCTACTAAGGAGGCTCAGGCACGAGGATTCTTGAGCCTAGAAGTTCAAGTCCATCCAGAGAGATATAGCCAGACCTTGTCCTGAAAGGAAGAAAGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGAGGGAAGGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAGGGAAGGAAGGAAAGAAGGAAGGAGGGAAGGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAGGGAAGGAGGGAAGGAAGGAAAGAAGGAAGGAAAGAAGGAAGGAGGGAAGGAGGGAAGGAAGGAGGGAAGGAGGGAAGGAGGGAAGGAAGGAGGGAAAGAGGGAAGGGAGAAAGGGAGGAAGGCAGGAGGGAAGGAGGGAAGGGAGGAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAAGAAGGGAGGGAGGGAGGGAGGAAGGAAGGAACTGTTATCTTAGAAACATTTTCCTTATTAACATACTAGGTTAAATTATATGCAAAAAAACACTTAACATGCAAAATGTGGAGTCTTCCTTTGAGTATATTCTAAGTGATAGTTGAGGAGACACTAAAATTGGCTGTTGACAAGGTTGAAAGTTTTGTCACAACTGCAGCAGCTGGGGAAGTCTATTTCCAAACTGTCATAATTATAAAATCTGTACTTTGGAATCCATTTAAATTGAGATAAATGCTTCACATATTTAAATAAGAATGTATATTATGACAGATACTATTTTTAGTATATGCATGTTACTTGGTGGAATAGTACAAAATGTTAATTTCAATTAAAGAGAAATTTTCCATCATATTCTGATTTCTCTGATTGTTTTTATACAGGTAATTCAGTGTATATAATATAATTTTAGTCTTCTTTTTATATTTCTCTTTTTTTATCCTTATGTGCTCAAAACAG
Seq C2 exon
ACAATGGTCGCAATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-KCNH7:NM_033272:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)