RnoINT0077793 @ rn6
Intron Retention
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48810124-48815130:-
Coord C1 exon
chr3:48814702-48815130
Coord A exon
chr3:48810145-48814701
Coord C2 exon
chr3:48810124-48810144
Length
4557 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCCTTATATGCTCAAAACAGACA
3' ss Score
4.42
Exon sequences
Seq C1 exon
GGAAACTTTTTGGGTTCAAATTTCCTGGTCTGAGAGTTCTAACATACAGAAAGCAGTCCTTGCCGCAGGAAGACCCGGACGTGGTAGTCATTGATTCTTCTAAGCACAGCGATGACTCTGTGGCTATGAAGCACTTTAAGTCTCCCACGAAAGAAAGCTGCAGTCCCTCTGAAGCAGATGATACGAAGGCCTTGATACAGCCTAGCCAGTGTTCTCCCTTAGTGAACATATCAGGACCTCTGGACCATTCCTCTCCCAAAAGGCAATGGGACCGCCTCTACCCTGACATGCTGCAGTCAAGTTCCCAACTAACACACTCCAGGTCAAGGGAGAGCCTCTGTAGCATACGGAGAGCATCTTCAGTTCATGATATAGAAGGGTTCAATGTCCACCCCAAGAACATATTTAGAGATCGACATGCCAGTGAAG
Seq A exon
GTACGTAACACGGAAAGATTTTTTAATTGGGTAATGGGTGTTTATTTTTACGTTGCTTCAAAACTGAACGGTGATCTGTTTCTTCACAGAAGAAATGTGATTAAAGCCATTAAAACATGAATCTTGCATTAAGATTTTTTTTTCTCATTTCCTCTTTGAACCCTAGTGAGTAATTTGACTTCTTCTGGCTTCCTTATCAGTGTTTCTGAAACAGTGTAGCCATTAGCAGCCTGCTACCTGGTGTGTTAATTAATTAATCCCTAATTTAAGATATGATTAGGTGATGAATTCTATCACCTAAAGCATAATTAATTTTCTTGGGTTTAAGCAAATAATCACACCCTGGAAGAAAGAGCAGTGTGCCCTCGCTGGACGGTGACACTGACCAGTGGGAGATAGGTGGGAAAGGAGGATAGGTTAGTGGGGAAGCCCACTGGGCAATTTGGAAAGTAGAGTCAGAACTTATTTTCCATCCTTTCTAGCCTTGTTCACATTCCTAAACTAGCCAGAGTGAGTGTTATGCTTTGGAAGTCACTAAGGAAGCCATCTATCTTTAGCATAATAATAGATAGCATTGTTTGAGTAGTTAGGATGCCTGACTCATTTAGATCTCATAGCCCTTCTGTAGGTTAGGAACCACTTTTAAACTCCATTTATAGATAAACAACTGCCACAGGGAAGGCAAGGAGGTAACAGCCAGTCAATGTTGAGGCTCCTATGGCCTCACTACTCAGAAGGCTTCAATTCCACCAGCAGTAACTCGCCTTCGCTTCTATTCCAGTAGACTCCACCTTAAGGAAAGTTGATTGAGTCCAAGGAGCCTGAAAGTAGCCTGACTGGATACTCAAACACACTTTTCCAACCCTTGCAGAGTTAGACACTTGAAGGGTCCTTTCCCAGAATCCTCATTCCTTCATATGCCTTTGCCACCTAAGCTGTTGTCAGCCATCTTTTCAAAAACATAAATCTACTCATGAGGGTCCTTACTAAAGCATTCCAGTCATTATTCCAGATGGGCAAAGTTACTTTCTAGACGTCTTCGCAACTGCTCACACAGCCATACCATACATATTACTCCTTCACCACTTTGTTCTGTCTAAAATCCTCTTCGCTGTCCACATTATTACTCAGCTGCAATCACTGACTCTCCCATTCCAAACTAGAAAAATCAAACGATTTCCAGAATTGAATGAACTTTTAGTTTTCAAAGTAGTGCATAGTTTAGCATTTATTCTATAGTTACCAACACATACAGCTATAGACGTACCGACAGACAGACAGACAGACAGATCAATGATGGTTGCGTGTGAAAACTTGAAAATATAAGATACCATCATGGTGGGCACTCTTGTACCTGTAGTTCTTCAGACTTAGCACTCAGCCCAGTGTACTACTTATGACAGATACTCAATACCATTGCCTTGGCATTGAGAGAACCATGCTCATGAGTCATAATCTAATATCATACTCATAAGGATATAATGAGCTCCTTCCTCCACATACATTGATTTATATCAAAGTCTTAGTATTGAATCATGTAGGGGGAATCTTTCTAAAAAGCACAGTGAAATAGAAAAAAACAGAAGAGCTGAAAGAAAAGAAGTGGGCAGGAGTATGAGCGAGGATCTCCAAGAGATATAAGAAACAGAAACCATCTCGGAATAAAAAGAAGAGTTTGGAATAAGACAAATCAGAGAAACAACATTACAAGAGTAATCAGCACATCCACTTTAACCTATGGTTTGAGAAGGGTAAAAAGAAAACTAAATTAATGACAATTCCCAAGCTAGATAATTGTGCTCCAGACCACCTAGGAATATTAAGTTCAATATTTTCTGACCAAATGAGACCTGTATAACTGGAGTTTTGAACAATGCATTCTATGATGAATTATAATAAATCCAGCTCTGTTCAAATGAACAGCATATACTTTAGTTTGTCCCTACCAGTCAGTACTCTCATCTTTAGCAAACACACCGAATCTTCAAAGTTTTCCCATAGGAAACTGAATTAGGGTAATAAATTTGAAAAATCAAAGTTCTCATGCTCAGAATGTCCTGCATACCTGTGTTTCAATATAATTTATTAGTATTGTATATAGAGTTTTACATATGTTGTTTTCCTCTCAGGTGGCCACCTCATGGTACACAGGTACTAATACAATTATCAGGAAGGGCAACTTGTTATTTTTGATAATTTTAGATTTCTCAGTATAAAAACTGCATGTAGAAAGATGCTTAATAATGTCATCCTTTGTTCTCCTCTCTTCTTTGGGCAATTTTCAGCAAAATACTACCGTCTTGCCAATACCAAGTCAGTGTGTGGCTGCAGAAGGATGAACTCACAGAACATTCACCACAGTACTTCAGCCTCAAAAATGATCTTACTTTTATTTGTTAACAAAACCACTGATAGGCTTGAAAGGAATTGCTATTCCTGGAGCTGTATAACTCTATATACTTGAGAAATGGAATACAAGTCAGAGTAGATGGAGACCTTCACTTTTGATTTTAGTTTTACAAATTCTTGAAAATGATTAAGAGATAAAGTCCTAGAGGCACCAGATTGGAGTTGAGAAGTTCTCATTCAAACACAGCATACCTCTAGTACCATTTTACGACTACAAATATTTTATGAATATATTAGGCAGTTATATTTTACGTAATCTTCTTATTTTTATTGGAAAGTACCTTGGCATTTTCCCTTCCTAAGGCATGTATTACCGGAAAACTGCCCAGTCATTTTTGGGATCCGCTCCAAGTTAACATTATGAAAATTATAGCAAAAATGTAGTAAAATAGACCATGGAAAAAAATAAACTTCAATTAGTTTATCATCGACATTCAAGAAACCTGAAATAGTCTGCAAGACACTATGAAAGAGTCGTAACGTTCTGCCTTTCTGCACCTTTATATCACTGGCACTATGATGCTGCCATCAGAAATGACACCAGGTATTGTGTACTTAACTTGGAACCAATTTAGCCAAACAATCAATCAACCAATCAGTCAATCAATCCATACAAAATATATTAAATAAAACCACTGATGGGCATAGGAGAAATAAGAAAGAGGTGTCCAGTTTATTTCAGTGTTCAAGTTTCTCATTCTTCCCCAGTGTCCCAGTGTCAAAGCTTTACTAACTCTACTCTAACTTCATTGCCATTTGTCTTTAGAGCATCTAGGTTTAATGAATAAGCATGCATGGGTTTGTGAGTGTGTGCATGCGTGCGTGTGTGGGTGGGTGCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAACATTCTATTAGTAGTTTCCAAAAGTGCTGGGGGTGTCACACCAGGGCCACATAAATGCTAGTCAAGTATCCCACTCCAAGCTAACCTCCAGCTCCATTTGTAAATTTTTCTAACCACTTGCAAAACAGTTACTACTTTACTAATGATTTTAGGCCACTCTGAGGGTGAAATTATTTGTGTGTAAACAAGATCTTGTTCAATGCTTCCTTTTCTGTGATTTGTTAAAAGAAAGGAGGACATGCCATTACAAGTCACATTCTATTAACACACTTCTGACCCAGGCAATGTCTCCTCTAACAATTCCATCAACCATAGTATTGAAATTACTTTCAATAAAAGCTTTGAAGCAATTATGCGGTATCCCAAGATATGAATATGCATAGTGATAAGATAGATGGCAACAAATGTATACATTTCTCAAACCTTGTATATACTTGAATGGTTTCTTATGACTTCATTTATTTTAAGCTTCTGTATTTCAAACCTGGCAATACATATTAATATACATTTTCAGTACCACAGAGCAAACATTAGATTTCTACTCTCAAAATAAATCTGAAAGCACTATATGCCAAGATTTAAAAACAGGCTGTTTTAATATAAACAAATTTATAAACATTATAGGTTTTATGCTGCTACACAGCAAACATGTAAATTATTTCTTTACAATAAAGGCTTCTGTTGATATATTTCAATTATTTTTCCTAAGAATGACTCATTAAATACAGTTAGATATTTTTAAGGTACACAGTAAAGAACAGTTAAGCATAAGGGGACAGTTAATAAAAATGTTCTAAACTATCCAAATTGAATTAGTAATCCATTGTCTAAGAAACTTTTCCCCATACTAACATGCTAAGGTTTAATTACGTAGAAAAATACTTGACATGCAAAATGTTACATGGTTTTCCTTTGACTTGTTACAAGCTACAGACATAAAAATTGGCTTTTGACAATGCTGCAAGTTAACCCAGCAACTATTCAGCAACTGTGCAGAGCTTTCCCCCAAATGCTATAATTTAAAAATCTGTAACTTAAAACAGTTTAAATTAAGTGACATGAGTATTTCACTTCTTTATAATGTTTATTATAGCTGACAATTCAGTTTGTGCATTTTACTTGTTAATGCTTTGTAACATTTTCTATATTTGTACTTTGGTTTTTCTGACTGTTTCTACTAAGCTAGTTTGGTGTACTTAACATAATTTTAGTCTTCTTTTTTATATTTCTCTCTCTTTTATCCTTATATGCTCAAAACAG
Seq C2 exon
ACAATGGTCGAAATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528:ENSRNOT00000009920:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]