BtaINT0079626 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34134745-34136815:+
Coord C1 exon
chr2:34134745-34134950
Coord A exon
chr2:34134951-34136733
Coord C2 exon
chr2:34136734-34136815
Length
1783 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
CAAAGGCTGATCTCTTACTACGA
3' ss Score
-12.72
Exon sequences
Seq C1 exon
GAAAAAATGATATATTTGGAGAAATGGTCCACCTTTATGCCAAACCTGGAAAGTCTAACGCAGATGTAAGAGCACTCACATACTGTGACTTGCATAAGATTCAGAGAGAAGATTTGCTAGAGGTTTTGGACATGTATCCTGAGTTTTCCGATCACTTTCTTACAAATCTAGAGTTGACTTTCAACCTGAGGCACGAGAGTGCGAAG
Seq A exon
GTATATGTTACCTGCTCATTTTTGGACTCTGACGTTTTATTTTATCCTTTGATTGCCCAAGGACCTCTGAAAGATCAAGTGAAATAGTGTAAACAGTTAAACAATTGTGAATATTTGAAAGGAAAAACCAACTTAATATTAGAATTTCTCAATTATAAAGAAGGAATTAGGTCTAATTGCCCTCAAGTATGTTGAATAACTTTAGTAGTTCAATTTGACCTTTTAGGAACTTTTAGGAGTTATGCTTGATCTATAATACCTTTTTTTTATATTGAATGTGACAGTTATTTGTTATAAATGGGTGATTCTAGGCTATTGAAAATCACCTAAAAAGAGTTTATCTTATACAGAGGTTAAAATATTCTCTCAGATACTATTTACACTGTATATTGGTTAGCAGTATCTTTTCAATAATCATGAAGAAGTTAAATTCTTAAAGTTTAGATACATATTTAACACAATTTCTAAATTGTAGAAGTATAAATTAATCAGGCCTATACCTAAGTCAAAATTATTGATGCAGAATGAATATCATATACTCTAGTAGAAATAGTATCTTAAATAATGTTACAAGTGATTTAACATAGGATCAATTTCCAGGGCTTAGCCTCTAAGGCCCTCACTCACCCTCCTCCACCAGGAAAGTGTGTCCTTATCACCCATGAGTATTCTAAGAATAGATTTTATGTTGCAGCCCACAATTTATTACTAGGTTATTCTCTATCTCTTCCCCCTCCCCACCAAATTCATAATCCTAACTCCAACTCTAAATACATTTTTTGCCAGAAACCAAATGTTTTGACACTTGCAAGTGTATTTTAATGTTAACTAATAAAGTCTCTGGAAAGTAAGATTCTCAAGTCAATAGGTAAAACACGGTAGATTTCATTTTCCCTGGAGTTATAGTCATTCCCAGGATTCTGTGAGAGAAGAGACTTAAAGAATTTAAGGTCACCAGAGTACTATTTGATAACCCGAAGCACCAGCTCAGAAAATTACTTTACAAAATGCTGAAAGTTGAAAAATCAGGTGGTAAGAGGTTCAAGTTACCAAGAGCGTATGCTTTTTATAATGATTTTAATTCAGAATTTTATCAAGTTGCAGTTTAATATCACTGACCTCATTTTTATTTTGCTTCAAAAAACAAGCATCTACCTCAGATAACTTCTTTGTAAAAATTTTAGGCAGCAACCAAATAAACAAAACAGAAGTTTCCATTTGTTTTATTTATTTGGAAACCTCCAGTTTTGTTTACAAGAGAGGAAGGAAGAATGGGGAACAAAACAGGGTTCAGAGCATAGTGTTTATTGAATTCGACCTTGTATTTATTATGAAATTTAACCTTGTAATCTTTACCATGTAATTTAAACATCATAGCTAATTATAATTAGTCTACACATTTTTTTCTGCAATGATACAGATTTTTCAATTTTTAAAATTATTGCTATTTTTATTTTAACTTTTCCAAGTTACATAAAATATATTACACAGGAAGGAATATATGTTGTCTGTAAGTATTGACATCATCCCGAAACATTTCTGATAAATAACTTCTACAACTATGATTTCCCTGGTTAAACTACTAGAATTATTCTGTCTATTTTATAATTTAGAGAAAATCATTAAGCAAATTGTTGTAGTTATTTGCCTGCAATCTATTAATTAAGTCTTAGTGGTTGAAATGATATGAAATAGTAGAGTTTACTGATGATACACTGTGTTCAAACTGAATAATCTTCCACTTTATCTTCACGTTCCATTAACAAAGGCTGATCTCTTACTA
Seq C2 exon
CGATCACAGTCCGTGAATGATTCTGAAGCAGACCACTGTAAACTGCGAAGGAGATTGTCATTTGATAGTGAAGAAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899:ENSBTAT00000002469:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=68.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATATTTGGAGAAATGGTCCACC
R:
TTGTCTTCTTCACTATCAAATGACAA
Band lengths:
279-2062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]