GgaINT0048093 @ galGal3
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22567366-22570346:+
Coord C1 exon
chr7:22567366-22567574
Coord A exon
chr7:22567575-22570246
Coord C2 exon
chr7:22570247-22570346
Length
2672 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TTCATATTTCTTTAATCAAGTCT
3' ss Score
2.28
Exon sequences
Seq C1 exon
CAGGAAAAAATGATATTTTTGGAGAGATGGTACATCTTTATGCAAAACCAGGAAAGTCAAATGCAGACGTGAGGGCTTTAACGTACTGTGACTTGCATAAGATCCAGCGAGAAGATCTACTAGAAGTTTTGGATATGTATCCTGAATTTTCTGATCTTTTCCTCACAAATCTAGAACTGACATTTAATCTGAGAGACGAAACTGCAAAG
Seq A exon
GTACATATAAAAAGTGATTTTTTTTTCCTTAGCATTGGGCAAAATCTAATCCGCAGTAACAAAACTTGAAGATAGCAGCTGAAATGCCAAGGTTAGCAAAATTAAAAAGCCAAGGTTAGCAAAATTAAAAGCTAAAAGCCTGAGGCCAAATCCTATTTTGAAAAAAAACCACACTCACCTGATTGCTTCTCCTGGAGTCAATTAAAGTCAGCAGAAGTGAATGAAATTATCCAGATAATGTTAATCTAACAGGATTTAGGTCTATATTTAAATAGTATTAAAGTTTTAGCTGGGGGGGTTTGGGATGTTTTGTTAAACCATGGAAAATATGTTTTTTCACCAAGCATGACTATAGCCGGGGTCACTACAAGGGGAACTTTAGACACTAAATATAATTGTATGACCATGAAATAAAAATAAACCAGATTTTCCAAAGTCATTCTTTGTCTAACAATGCAGAATATTTAACTGTCTTTCAAATATGAATTGTTAATTCTCTTCTCTTGGGATGCACCCTACTCCTAGTAGGCTAAAAGCATAGAAGAGACTTTTCAAATGTCATTAATTCTTCAGATGTGCAGGGATTTATTTCTCTTTTTTCCTACAGTGATTCTTCTATGTTGTCTCCTTTGCCCAGAATGCATCTTCCAGCATGCCAGAGAAGTAGAAAAATCCTTAGTGCTTCCTTATGTCAGGCCAAAGAAGTCAGTCTGAACTGGGAAAAACAAGGGAAAGTTAGACCAGAAGGAAAGAGGGGAAGGGCTTCTTGTGCTCTAGAAAGCGTTCCCTAGAAATTTGTAGAGTACACTAAGCATTGACCACCAAACATGAGTTACACTGCCCAACAAAGGGCAAGTTTACATTTCATTCTTTCTGAGCTCCTGCTAGTTTGTGGTTTTTTACCATGCTTTCAAGGAAAAAAGAGAGAATGAGTGAGAAGAGGGTAACAGAATTTGACCTCAAAGACCTTCCAAGAAACAGAAAAACTCTTAAGTTTCAGATGGTAAATAACAGGAATGGCTTTGCTAATCACATGTTGATCATTCCTTAAAAAGATTCAATAAAAATAGCTTCTGATTAGAAATGCCATTTTCTTCTTTTGTTGAGCCTTTTCTTCCATAAAAGATTGCTCTGAAAATCTGAAAAAAAGACCAATTCTATTCTTTATTTTAAAATGTATTCTGTTATGTTTATTGAAAAGGTCATCATTATTAATTTTATGGGAAATACTACACAATGAATTTATAGTCCAGTGATGAATTTAACTTAAAACTGAAAGTTCACATATTTGAAAAACTCCTTGAAGATAAATTTAGATTAATGACTGTGGCCTTCTTAGCAATTTTTTTTCTTGCAATTATAATACCATCAATGTTTTATCATTATTTTTCTAGATCTGAGAAAATTGAAAGAAATCACATTATGTTGTGATGTAGTAGACACAAAGGAAGTTCTTGCTGCTCAGATCCCTTAGAAATTTTTCAGCTGGTATTTCTTACTGCTGTGCCAGCTACTAAGAAAAAAATCAATAGACTTCACAGACAGGAAAGGACAAGCTCATCCATGCCTCTGATCCTGCAGAATCACAATTTTCGCTAGCAATTCTACTTTCATTCCACTGACTGTCACATCCAGAAAATCATTTAAAAAAAAAAAAGTGATGAGCACAATCTGATATATGAAACATCAATGAGATGCAGATATGTTATCTGAATAATAGATGCTTCTTCCTTAACTTCTGCTCCTGTCCTCTCATTTATGGAAAGTGCCTTTTTTTGTCCTGCAGTTATTCTACTTGTGACCCACCACTTAGACCCCTTACTGATCAGGTTTACAGTGTGTAGAGAAAGATGTAAGCATTTACCATGGTTCCTTCTGCCCTTCTCCCACAGTATGTTTTCTTCAGTGGTACAGGAAACCTCACTGGCACAGGGAAGGGAAGTACGCTGAAGTCAGTGCCTTGGGTGTGTACACAAAGAGCATAATTTGTGCTTTATTGGCTTATACATAATTTTCTCAGTTATAAGTAGAAAGAAGTGTTAAATGCATCTTTTATTCATAAAGGCAACAAAAAGCACATATATTAATGTGTACAGAGAAAGACAGCATTATATTAAGCTATGGAAGTAAGTATCTTCATGACCTGAATAGAGAGGAAAGGAATGTCTAGAAAGTTAAAAATAATGAGGAGTATACTGCCTGGTGCTTTTCAATCTTGTATTTATTGTTTTAAAATGTAACCTTTATAATTAGTACCATACAATTAAATATAAATCTAACTACAATCAGCTACCACCTTACTCTTTGCAATACTATACATTCTCTGTTAAAGTGATTTGTTGGTTCTGGTTTTTGAGTTGTTTTTTGGATTTATTTTCTCTAAACTTATTTAAAACACATCTGTGCTAGTTCAGAAAGCTGATAATACAAGTGAATCTATTTATCAAGATACTTTTTCACCATCAGGTAGCGACATTGCCAGTTTTGCTCTATATGTATGAACTTTATAACATTAGCATTGACCAATACTATTAGATTGGGATGATGTAGACTGACTGGTCTAACACTGCCTTTCTTAAAGCTTGAAGATGATTGAGTCAATCAACTATTGAAAATCTGCTCTCTTTATGTGGGACTAATCTGTCATTATGTTTCATATTTCTTTAATCAAG
Seq C2 exon
TCTGACATCATAATAAGATCACAAACTACTAATGATACAAATGGAGATAACTGCAAACTACGAAGACGGAAATTGTCCTTTCAAAGTGAAAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.9=68.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]