RnoINT0077800 @ rn6
Intron Retention
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48705774-48706720:-
Coord C1 exon
chr3:48706515-48706720
Coord A exon
chr3:48705856-48706514
Coord C2 exon
chr3:48705774-48705855
Length
659 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AGGCTGATCTTTTGCTTCAGTCC
3' ss Score
5.13
Exon sequences
Seq C1 exon
GAAAAAATGATATCTTTGGAGAAATGGTTCATCTTTACGCCAAGCCTGGCAAATCTAATGCAGATGTGAGAGCGCTCACGTATTGTGACCTGCATAAGATTCAGCGAGAAGACTTATTAGAGGTCTTGGATATGTATCCGGAATTTTCTGATCACTTTCTGACAAATCTAGAACTGACTTTCAACCTGAGACACGAAAGTGCAAAG
Seq A exon
GTAGAGATCCAATGTTGATCCGCGCATCTCTGAAATGCCATTCTAAAATCTCCCAAATGCTTCTGAAAGGCAATTTACTGCAGCAAACATTTATCAATATTAATTACCTAGAGAAAAGGCCACTTGAATATTGAAACTAGTAAATTATAGGGTAGGAATTCAATCCTAAAAGATGTTGAATTATTTTAAAGGGTCAAATAAATTTGACCTTGGAGAAATTCTTATTCTTGGTTTATATATACAGATTATTTGAAGGAAAATGAGTGATTTTAAGGAATTGTTAATTTTCAAAGTTTTTCTCTACATGCTAATGCCGGATCCTAATGTTCTTTTTTTATCTTTATTAACTTGAGTATTTCTTATTTCGGATCCTAATGTTCTTAACTTATAGCTTCTACACAACATGGTTCCCCCAATAAAATTGTGAAACTACTAGAATCAATCAATCTGTTTTACTATGAATCTGTTTTACAATTTAGAGGCACCTTTCAAGCAAAAAAAAAAATGGTAGCTATAGGCCAAAAATGTAGTTCTTGAGATTTAAAGGGTTGAGGGGATGGCACAGTAAGGAGTTCACTGATCATGCATCATCTTCGTGTTGCATAACTTTCTATGTTTATCTTTGAGCTCCATTAACAAAGGCTGATCTTTTGCTTCAG
Seq C2 exon
TCCCAATCCATAAATGATTCTGAAGGGGACACCTGTAAGCTTCGAAGAAGGAGATTGTCCTTTGAAAGCGAAGGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528:ENSRNOT00000009920:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=68.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCTTTGGAGAAATGGTTCATC
R:
TGTCGCCTTCGCTTTCAAAGG
Band lengths:
278-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]