MmuINT0085528 @ mm9
Intron Retention
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62572276-62574235:-
Coord C1 exon
chr2:62574030-62574235
Coord A exon
chr2:62572358-62574029
Coord C2 exon
chr2:62572276-62572357
Length
1672 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TGGCTGATCTTTTGCTTCAGTCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
GAAAAAATGATATCTTTGGGGAAATGGTTCATCTTTATGCCAAACCTGGCAAGTCTAATGCAGATGTGAGAGCACTTACGTACTGTGACCTGCATAAGATTCAGCGAGAAGATTTATTAGAGGTCTTGGATATGTATCCAGAATTTTCTGATCACTTTCTGACAAATCTAGAACTGACTTTCAACCTGAGACATGAAAGTGCCAAG
Seq A exon
GTAGAGGTCCAATGTTGATCTATGCATCCCTGAAATGTCATTCTTAAATTTCCCAAATGCTTCTGAAAATATCAAGCAAATTACTGCAACAAAAGTTTATCAATATTAACTACCTAGAGAAAAGGCAAGCTGAATATTGAAATTAGTAAATTGTATGGCAGGAATTCAGTATTAAAAGATGTTAAATAATTTTAAAGGGTCAATTAAATTTGACCTTTGAGAAAGTTTTAGTCTTGTTTGTATATACTAATTATTTGAAGGGAAATGAGAGATTTTATGGATAGCCTAAAAGAGTTTGTCTTACATAGAATATTCTCTCATCTATTATTTTTCACTATATCAGTTGCTATTGATTTCTCTGTAATATTTAAAAGATCAGACTTATTCAAGTTTAAATTTATCCTAATCTCAATATTCAAATTCAAGAACTATGAATCAATTGTCTTAAAATAAAGTAAAAATCTAGGCTATGGAGTGAATAATATATGGCCTAAATGAAATAATATTTTATTTTTAATAATACATTTTACTTAACCTAAAATAATTTTGAGAGTGTGGCTCTTACTGTACTCCACTATGAACTATGATTTCTGAACTAGTCCTATTCCATGGAGAGAGAACTTACATAGTAGTTCACAGTTATTACTAAGTTAGTCCCCCAAATTTCAGAAACTCCATTGCTATTCTAAGTGCCTATTTCACACACATCAAACACTGAGCACTTGGTATGTGCCCAGTGTATTTACATATGATCTAGTATATTCTATGGGGGGAAAATCCCTAAATCAGTATTTATTTTAAACGGTGTTAAATTTAAGTCACCATACAGTTGTAGTCATTTGCAGGCACTGGGAGGGACTTAAGAAACAGCAGTTGCCAGGGTCCCAAGGTTGCCATTCAGTGTTGTGCTGCTCCAACTGAGTTAACTCCTTCTTTTCAAACCAATGAAATATTAAAACATACACTGCGAAGTCTGAAGTTCTTAAGAATATTTTCATGATAGTTTTAATCGAACTTTACTGTGAACTTGGCCACATGTCACCAACCTCATTCTGATTTTGTCTAAAAAGCAAATACAAACCTCAGATAACTCCTTTGTACCGATATACAGACAATACACAAATGAATAGTTTGGGGCTTTTGTTTACAAGATTGATATTGTACAGACAATCAAAAAAGGAGACGGAGGAGGAGGAGCTGAAACAGCCTAATTAATGCAACATCTATTGTCTTTAAATCATATACTTATTGTAAAATTTAATCTCATGTTCATTATTATATAATTCATACATCTTAGCTATTGTTAATTGATTCATACATTTTGTTGGCAATAATACAGGTTCTTCTATAATTTCTAAGTTTTAATTTTTTAAAGATTTTTCTCTACATGCTAATGCTGGATCCTAACATTCTTAACTCATAACTTCTGCACATCATGGTTTCCCCAATAAAATTTTGAAAGAACTAGAATCTATCAATCTGTTTTACAATTTAGAGACAACTTTCAAGCAAAATATTGTAGCTATTTGCCAAAAATCTAATTCTTGAGATTTAAAGGGTTGGTGCCATATAACATAGTAAGGAGTTCACTGATAATACATCATCTTCAAGTTGAGTAGCTTTCTGTGTTTATCTTTGAGTTCCACTAACAATGGCTGATCTTTTGCTTCAG
Seq C2 exon
TCCCAATCTGTAAATGATTCTGAAGGAGACACCGGTAAACTTCGGAGAAGGCGATTGTCCTTTGAAAGTGAAGGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-Kcnh7:NM_133207:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.786
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=68.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATGATATCTTTGGGGAAATGGT
R:
CTTTTTCCCCTTCACTTTCAAAGGAC
Band lengths:
286-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: