DreINT0013151 @ danRer10
Intron Retention
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10323046-10329057:+
Coord C1 exon
chr6:10323046-10323251
Coord A exon
chr6:10323252-10328966
Coord C2 exon
chr6:10328967-10329057
Length
5715 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TGTCATTTCCTGTGTGGCAGGAC
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTAAGAATGATATTTTTGGAGAGATGATTCATCTCTACGCCAAGCCCGGGAAAGCCAACGCAGATGTTCGAGCGCTGAGCTACTGCGACCTGCACACCATCAACAGAGAGGATCTGCTGGAGGTTCTGGACATGTATCCTGAATTCTCCGACTACTTCCTGTCCAATCTGGAGCTCACGTTCAACCTGCGGGATGAAAACAGCAAG
Seq A exon
GTACAAGCATTTACTGGGGGTTTGAATTAAAAGATGAACATAAAATGTGAAAATATAATAAGATGCCTCCTTTCACACGATATTGAAAGCTAAGAAAAACAACACTAAATAACAAACTATAAGCACATTAATAATAGTATAATTTATGAATGTCAGACTGGCAGTTCACTGTGGTTTAGCAAATATATGGTGGAAAAACACAGCCAGGTACAGAAGAAGGCATGAGATGATGGTTAACAGTAGTGTGGAAATACAATGCCTTATGAAATATGCAGCAGCATGTGCCATGAAATATAAATATACTTCACAGTGATTGCGGTAGATAAAAATAGATCCCGACAGCTGATAGTTGTAGCATAATGACATCCCACGCTTAACAATGCTCAATCGATATGCTGTAGCCTGAATCAGCAATGCATTTACATTTATTAAATCAGCACAACAGCAGCAAGCCGAATCAATAAACGAGCAACAACATGCAAGTCAAAGATCGGTTAGTGTAGAGTAGTGACCTTAGCTTTTTTTTCATTATGTTGGCTTGAGATACTGGCCAACATACAGACATTCTATTAAAAATTATTATTATTATATTGTTGTTGTTTTATTTTTCTTCTTCTTAGACTATTTTACAGGGTCTCCTAGACCTTTAAAGCTACAACCACCAAATTCCAGACTATTCTGACTCGGGTTACTATGTCTTTTGGATCAAACTTTTGAGACCTTATAACTCTGCAACAGCACAGTAGCCAAACTTTCTGGCTTTTCCTCCTAACCACACCCTATCAACCACTTACAGTACAGCTGTACCGTAGGCTTCCAATGTAAAAGACTGTCATTGATTTAACATTGAAAAAGTAGTCCCATGGATGTTTCTGGAGACGGTGAATTATGTAGCCGGAGGTACTTATGGCTACATTTAATTTTTTTTGAAGCGAACGCTACGGGGTATGACGCCGTTCCTTTTGGCGCTTACTGGCTGACCGCTTACCTCCTTGTGGAGGACTTTCCCGCCGCTGTTTTAAAAGTAATGAACAGATAAAGTGTTTTACAAATGGGTATGTAGCTCAGTGGCAGAGCAAAAATTGTAGGATTGTCATTTTTACATTTTATTACATTTGTGCATTTGGCAGGCAGACATTTCTCCAAAGCGATTTATTTTTTTCATAGAAAGTTCTTGCTTTTCCTGGTTATCGAATCCTCATCCTTGGCATTGCTATTGGCAGATTCTACTGTTTTATAGTAGAAGTCGTTTAGAAATTGATGCTTTTAAGGTACTTGCAAGTAAATAACAAATAAAGTGGAACAGTCATAAAGCTTTCAGATGTTGTTTTGTTCGGTGGCGGTTTTTGAAATCTACAATGTTCAGAACCACTATGTTACCGTGTTGAGTTTTTTGAAGCAAATGTTTTGTGACAAACAGACTGAAATGTATGCTGCTGTTCTGATAACTGTATCTATGTATGTGTCATTGAGTTCAGTGTAAATCTGCTAGAGCATTATACACTCACTGGCCATTTTATTAGGTACACATGTCAAATTGGTCGTTAACGCAAATTTCTAATCAGCCAATCACATGACAGCAACTCAATGTATTTAGGCATGTAGACATGGTCAAAACAATCTGCTGCAGTTCAAAACGAGCATCAGAATGGGGAAGAAAGGAGATTTAAGTGACTTTGAACGTGGCATGGTTGTTGTTTGCCAGATGGGCTGGTCTGAGTATTTCAGAAACTGCTGGGGCCTCATGTACGAAGACTTGCGTGGAAATCTTACTAAAACATTGCGTACGCAGAAAAAAATGCAGATGTATGAAACACTGCGTACGCCGAATCTCACGCATATTCTTTTGTACATCCGAATGAACGTGAAACTGAGCGCAACATGCACGAGCACAAAACCCCTCCCTGCCTCCTCCCCCGTATGAATATGCTAATGACTATGCTAATGGAAAAACCCAACGAAAAAGCAATGGCAAAATCAAGCAAAAAGAGAAACTTTGAACAGAATGTGAAATGGAGGTGCTGCTTTCTGAGGTAGACCGGAGAAAAGCGGTGTTATTCGCAAGTTTGTTCTCCGGCATTAAGAACAAAAGAAAAAAAATAGAGTGGGAGAGTTTAGCTGATGCGGTTAAAACAGTTGGGTCTGAACATCGCACTGAGTGCATTAAAAAAAGAAATAGTGTAGTTTATATCTGTAAAATGTTGCAGTACCCTTAGCAGTCTCAGTGGCGCACCTCGTAAGACACATGTGATCATGTATTGACAGGTTCAAGCATGAACTCGGCTCGATTCCAGCGTCTGATGAACTCTTTCCTCTTTTTTTCCCCGCTACATATCAGATTTTGCCCACTATTTATCACGAGAAAGACAAGTAGGAATCATCAATAAGTCTGTGCATCATATTTTATTTGCACATTTATTGAATGGAAATGTTTCTGATTCACACATGGAAATTCATCTTCAGATAGTGTCTTTATAACAATGTGCGTGCGGTAGATCGCTCAGATTACATTGGGAAAACAGGCGACCGCTGCAAATTGTGCTTTAATGTTTAGCTGGTCAACTGTATGGTATGGAAACCTTACATACCTACTAGATGAACCCGTCTCATACAGCTGCCATTGCAAGGCTCAGACACTTTGTAGAGAGGAATTTAACACAACTGCCTCTAGGAGTCGCCAATGGAAATAAAACAGACACGCACAAAAAATGTGTGTACGCCAGCCAGAAAGCTGCCGTGAAGCTGCGCACATTCCCACGTTCAGTTCATTGTAAGTAAATCCAAACGTGAGCGATTCTGAGCGTGAAACCTGGCGTACGCAAAGTTTTTGTGCGTACGCAGCGTACAGTGGTTTACAGTGAATAGACCATAAAATATCCAGTAAGTGTCAGTTCTGTGGGCCAGAATGGCCTGATTGATTTGACTTGATAGAAAGGCAACAGAAACTCAAATAACCACTCGTTACAACCGAGGTATACAGAAGAGCATCTCTGAATGCACAACAAATCCAACCTTGAGGCAGATGGGCTACAGCAGCAGAAGACCACACAGGGTACCAATCCTGTCAGCTAAGAACTGGAAACTGAAGCTACAATTTGCACAGGCTCACCAAAATTGGACAATAGAAGATTGGAAAAACGTTGCCTGGTCTGATGAGTCTCGTTTTTTGCTGCAACATTCTGATGGTAGGGTCAGAATTTGTCGTCAACAATATAAAAACTATGGATCAACGATTCAGGCTGGTGGTGGTGTAATGGTGTTGGTGATATTTTCTTGGCACACTTTGGGCCCATTAGTGCCAATTGAGCATCGTGTCAACACCACAGCCTACCTGATTATTGTTGCTGATCATGTCCATCCGTTTATGACCACAGTGTACCCCATCTTCTGATGACAACTTCCAGCAGAATAACGCGCCATGTCAGAAAGCACAAATCATCTCAGACTGGTTTCTTGAACATGACAATGAGTCCAGTGTACTCAAATGGCCTCCACAGTCACAGGCACCTGTGGGATGTGGTAGAACGAGAGATTCCTATCATGGATGTGCAGCTGACAAATCTGCATGATGCAGTCATGTCAATATGGACCAATATCTCTGAGAAATATTTCCTGTACCTTGTTGAATCTATGCCACGAAGGATTTAAAGCAGTTCTGAAGGCAAAAGGAGGTCAATCTGATACTAGTAAGGTGTACCTAATAAAGTGACCAGCAAGTGTTTGATCCTGGCATAGCCAACATATACACATTTGTGTTGACACACTCCTTCTCCATGAAGCTTTCAGACAACAACTTCTTCATAGTTCTCCTTTTCATAGTTTATTCAAGACCATTTCTTATCTATGATCTTAATGCCAGATTTTGCTCAAATGTACAGTACACCGTAAGCCGAACTCAATGTCTGAGCTTGGACATGCAAAATCAAACCAATTTTTGAACGAATTGAGGCTTTACTAGAATAAACCTAGAAGTTCATACAGTGTATTAAATACAGGGTTCCACACAATTCATGTTGTCCTAACACAAATTAAGTTAACAAACGTAAATGGATTGAACCTAAAACAAACAAGTTTTCCCAAACAAATCTGAAGAATTGTGTTGTTTCTGCTCAATTTAAGTTAAGTAGTTTAAACAAGCAGTAATGTTTGCTATCATACATAAGAACATTACATATTATTCAGGTTGTCATAGCAATTTGATGCATCACACACAAAATGCGTCTATTTTTACTGTGTCAAAAAATAAACATGTTAAAAATAATACACTGTTAATGCATTATTTGTTACGGAATAGTTTATTCAAAAATTGTACTCAAACAACATTTACTCACACAAGTGCTTCTAAACTTTTATGAATTTCTGGTAATACTTTAGTTTAGGTCACAATTCATTCTGTTTAAACTGGCTTATTGCCTGCCTGTTATTGAGATATTAACTCTTCATTAGCAGTTATAAATTATGATCTCATTCTGCATCCCTAACCAAACCATAAACCCAGCACCTATCTTTCTAACTATAAATAAACAGCTAATAAGTCGTTTTTTAAGCTAGTAGTTAGTTAATGTTTTTTTATATATATATAATTTATTGACCTGAGTTTCTTTCTTTATTAACACAAAACAAGGTATTTTGAAAAATGTTGGAAAAAAACTAGCCGTTCATAGTAGTTAACAAAAATATAGTATGGAAGTCAATTTTTGATATTTTTCAGAACATCTTTCTTTGTGTTTAACAGAAGAAACTGGATCTAGTGGAGGATGTGTAAGTGATGGGTGAAGTATCCCTTTAGCGCTGCTGTCATCCTTCCAGAAAGTGTAGCTAGAGCGGAGAGGAGCTTTTCTTAGCTTAAGCTCATCAGACATGTCTGCGGTTCACCCTGACACAGGATCAGTGCTGTTGCATTTGTTGCTATAAGCCTTGTGGTTGTTGGGTGAGAATCAAACAATGACGTTATTGATGAAACCGCATCCGTCTAAATGTTTAAATCAGGTGAAGCGTAATCCCCCAAGTGAAAGCATTGATATTTTAGTCTACCAGTTTACTAGTTATTCAATGGTTGTTGTATTCATTGGTTTTATTTACAGCAGTTCATTATATTAGTGATTAGGAAGCAGTGGTAAGTTGCCACTGTTAACACTCCACTTTAATCTTGATTGGGCGCATATATTTTCACTGAATTATGACTTCAGTTCAGTCTGTTGCTCTTGGCATGAGTTTGAATTGAATATGAAGTGCTGTTATGATGCCCTTTATCTCATATTGAAGTTTGACAACATCAGCAACCATTCACTGCCATTCTATTCAGTGGTTGGGCAAATTTCAATACTTTAAAATGCAATAAAAATGTGAGCCAAACGTATTACCTTAAAAGAAATAATTCTTAAAAATATTTAAGAACACAGAATATTTCAAATAGATTAAAATGTGAACAATTATGAAAATAAATAAATAAATAAATATGCAGTACCATATGCTGGATCTTATGAAATGAGTTGAGTTTCAGACCTAAACTAGTCAAGTGTGTTCATGTCCTCATAAAGGAAGAGAAAGAAAACCGAAATGTGTCATTCAGAGCCAACAGACTTATTGCAGTTCACAGATGTCCACATTGTGATTTTATTAGGAGTATGATTGATACTGTTTATTCTTTGTTGTTCCACATTTTTTTATGTGTTTAACACTTTGCTTAATGTGATGTCATTTCCTGTGTGGCAG
Seq C2 exon
GACACCACGGCTCCCCAGAGGACCCTGTACACTGCTGTGAGTGACTCCGACACTGAAGACCCTGATGTGAGGAAGAGGAGACGCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687:ENSDART00000151288:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=68.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]