BtaINT0079668 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000973 | KCNJ15
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 15 (KCNJ15), mRNA. [Source:RefSeq mRNA;Acc:NM_001099018]
Coordinates
chr1:152301468-152301847:+
Coord C1 exon
chr1:152301468-152301492
Coord A exon
chr1:152301493-152301742
Coord C2 exon
chr1:152301743-152301847
Length
250 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CGTGGCCCTCTTTCTTTCAGGAA
3' ss Score
12.64
Exon sequences
Seq C1 exon
CAGTTGATAGTGGGCTTCTGTGGGG
Seq A exon
GTGAGTTAACCCACTCTTTCCAGGGTGTTTTACTACTGAGCTCCCTCCAGAGGGTGGGAATTCTACAGTGAGGATTGTGGCTGGGGCTTCAGTTTCATTCCTGAAACACTCCTTGAGCTTTGATCTATTCTGGGCACCCTGCCAGATCGCCAGGGGGTGCGGGGGTGGAAGGTGAACGCTGAGGGTCAGTTTCACTGGGTCAGTTTCTTAGTAAACACCTGTGAGCTCCACGTGGCCCTCTTTCTTTCAG
Seq C2 exon
GAAGTAGCAGAGTCCCATGGTAGCCAGGTGGGCGAAGGGGAGTGAGGACCATCCACCTGCCTTGGAGAAGACACCATCTGACCCGCCTGCCGAGTGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000973:ENSBTAT00000001288:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]