BtaINT0079902 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6391514-6391654:+
Coord C1 exon
chr16:6391514-6391554
Coord A exon
chr16:6391555-6391605
Coord C2 exon
chr16:6391606-6391654
Length
51 bp
Sequences
Splice sites
5' ss Seq
AATGAATGT
5' ss Score
-2.31
3' ss Seq
TCTTATCATTCTTTTTATAGGTC
3' ss Score
11.33
Exon sequences
Seq C1 exon
CAACATTTAAATATTTTCAACTTTTATCAAAATTTGAAAAT
Seq A exon
GAATGTTTTTTTCACTTGGAAAAATCTAATGTCTTATCATTCTTTTTATAG
Seq C2 exon
GTCTCATATCTTTTGGGTGAACAGAAGTCTACCTTTATGGGGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729:ENSBTAT00000048534:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development