DreINT0013225 @ danRer10
Intron Retention
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64814901-64820266:+
Coord C1 exon
chr5:64814901-64815006
Coord A exon
chr5:64815007-64820217
Coord C2 exon
chr5:64820218-64820266
Length
5211 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTGTTTTTCTGATTTGAAGGGA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTCTCAGAATACGCCTCTTTAACCTCTCCTTAAAGTTGTTAACATGCCTGCTCTACATAATCAGAGTCTCACTTGATGATCCAACTAACCAGGTCACATGTGCACG
Seq A exon
GTGAGTAAGAGACATATATACTTAAAAACGGTGACAAGTTACATGAATTATGATGTACTAAGCAGCACAGTGGCTCAGTGGTTAGCACTTTTGCCCCACAGAAAGAAGGTCACTGGTTTGAGTGCAGTGCTGACCCACCAATGTTTAGGGTGTTGCGGTTTAGGGTTGAAACACCCAATGATCATTGGGTACCGCTTGATGACATCAACTCTTCCTGGCCAAGGCTACATTCACCAAAAGTAAATAAAGTAGAAGCATCTTTGGATGTAATTGTAATTAAGCACAATGAAATTTTGCATTACTAATCGACGAGGAAACAAGCATGGACAGTGCTTTTACATTATTTATTCATAGAAAGAACAGCCAGAAAGGCGAAATCAATGGATTTGTGTTGAATATCAGTGTTACGGATCAAAACTCAAAACTGAAGCTCAAATAACATTTACATTTAGTCATTTAACAGACGCTTTTATCCAAAGTGACTTACAAATGAGGACAAGGAAGCAATTTACACAACTATAAGATCAACAATAAATAAGTGCTGTAAGCAAGTTTCAGGTATGTAAAGAAAGTGTAAGAAGCAAAACATTAGTAATATATATATATATATATTTTTTTGTAGTAGTAGTTAGCGGTGGAGCCAGAGAGGGAATTTCAGATTAGTAAGGAAAGTGGAGACTAAATAGTTGAGTTTTTAGTCGTCTCTTGAAGACAGCGAGTGACTTTGTCGTTCTGATGCAGTTAGGGAGTTCATTCCACCAACTGGACAGATTGAATGCGAGAGTTTGGGAAAGTGATTTCTTCCCTCTTTTGGATGGAACCATGAGGCGACAGTCATTCACAGAAGCAAGTTCGCCACTCCTTTAGCACCCCTCACAGAGCTTGATCCACGCTGGCATTTCTCCTCTTGGGTTTTTGGTTTTAAAAAGGGAAAAAATTCCACCACCCTCTCCAAACTTTTAGGATACCGAGTATCAGATTTGCACAATCCATATACAACAAGGCTTGTTTCCATCCCTCGAAAACTTGACAGAGCCCCTGCGCCTAGCTACCGTTGCTAAGCCACGATTGATTCTTGGGTGTGGCTTAGTGAAGGGTCGATTGCAACCCGGGCTCATTGTGGAAATGTAGCCCCGCGGATGTTTCTGTGGACTGCGATTTACGTCCCGGGAGGTACGTATTCGAGCGTTTTTTTGTTTTCGCGGATCTGCGAGAAGCCGCTGTGCGCGCTTTTTCGCGTCTCGGGCGCCTCTCGGGAGCGCGCGCCGTTCTCGCGTGAAAAGCCGCCGGATCGGAAAAAAAAAAGCAAAAGCCCTCGTCTTCGATTTCAACCGCGTTTTCGGATCCCGCCGCGTTCTCGCCCTTATTTTTCGGATTACGTTTTTCGTCTTAACTGATCTCCGGAACCTGCTGTTCCCCGGACTCGATCCTGGTCGTCGTCCACCGCGGCCGGCTCCGGCTCCTCCTCCGGGGCCTCCGCTCCGCCGACGTAGCGCTGTGAGCTAAGCGGACAAACTGATTGCATCGGGAAAGCCCTCCACTCGGAGGCGAGCCATCGGCCGGCGAGCGCGAAGAGGAGGGGCGGAGCGGCGCCACACCGCCCCGCAGCGTTCGCTCGAAAAAAAACAAACGCGGCCTTTACATACCTCCGGCCACGTAAACCGCGGTCTCCAGAAACGTCCGCGGGGCTACGTTTCCAGAATGAGCTTGGGTTGGTCGATTGACCACTTTAAAATCATCATATGAGCCATAATCAATAATAAATCAATTAAAATCTTATCACAAAGTTTTCAAATTGAGACCTGAACTAACTGCTGTATATTGATTTTGCTTCATCTCTTTGGTGCAACGACAACAGCAGCATCCTGAAGCGAGGCACATTAATGCTGTGCTGAAATAGCATGAGATCGGCTCTCGGGACGAGTCCAGACTTCTCATTCTGAAGTGTCCTTTTAGAGTCACTCTCAGTCACAGAAATCACTCTGGGGCAATGAATCAAAATGTGTGTGACAGAAAGAGAGAGCAGTGTGTGTGCTTGTGTGCAGGCATGCCAGGAGCTATAGTAGAAACAATCAAAAGAGAGGGTAGCACTGTAGTTTAGGTCATACCTGCCAACATTCGGATCATAAAATCCAGGAGATTTTTTCCGCGGATGCGTGCAAAGTGAAAGTCGTGGGGGGTTGTTGGGTGAAGTGAAGAGCGGGGTGAATGTGCGCGCGAACTAAAGACCAGGGAGGGGGTATAAAGATGGTTGCACATTGGGTTCGGTGCACATGGGGACTGAACCAAAAAACTAGCCAGACTGTACCAAAAAGCTGGGAAGTCTGAAATACGGGAGACCCCCGGAAAAAACTGGAGAGTTGGCAGGTATGGTTTAGGTCACAATTCATGCTAATAACTACTGGCTTATTATCTGCCTAATATTAAGGCATTAACTATTAATTAGCAGCATGATTTTATTCCGCATCGCTAATTCTACCCAAAACCTAAACCCATCTTCTACCTTACTAACTATTAATAAACAGCTAATTAGTAGTTTATTAAGCTAGGAGTGTTAGTTTATGGTTTAATAACCCTGAGAATTGTAATCTCAAGTGTTACTGAGTGAGGTTTTCATGGTCTGAGGGCCTCGGGAAGAGAATCCCCAGGTGGAAATACAGAATAAAGAGAATATTTAGCGTAGCTGCTGTTCATAGTGTATATAAACGAGATGCAGAAACCTTTGTGGAGCACATTCATGCATCACACCGTTACATGGTGCCCCGAGTGTATGCTTTACTAAAAAGGTCTTTAATCTAGTTTTGAACAGCGAGAGTGTGTCTGAGCCTCGGACATTATCAGGAAGGCTATTCCAGAGTTTAGGAGCCATAAATGAGAAGGCTCAACCTCCTTTACTAGACTTTGCTATTCTAGGTACTACCAGAGGCCTTGAGTTTTGAGATCTTAAAGAGCGTGTTGGATTGTAGCGAGACAGAAGGTTGGTTAGATAAACAGGATCTAGATTATTTAAAGCTTTAAACTTTACTGTGCTAATTTTTGGACTGTACCAAAAAGCTGAGAAGTCTGAAATATGGGAGACCACCGGGGAAAACGGCACTGTTAGGAGGTATGGTTTAGGTCACAATTCATGCTAACAACTACTGGCTTATTACCTGCCTATTATTAAGGCATTAACTATTCATTAGCAGCATGATTTTATTCTGCATCGCTAATCTACCCAAAACCTAAACCCAACTTCTACCTTACTAACTATTAATAAACAGCATATTAGTAGTTTATTAAGCTAGGAGTGTTAGTTTATGCTTTATTAATACCGTGAATTGTGATCTAAAGTGTTACTGAGTAAGATTTTCTCAGGCTGTCCGTTATGCCGGAGTCAGCAGTCTTATAACCCTGATGTCTTTCACTTTCATGTGTGTCGTGCACTAACTGATTGCTATCGTGATTATAGGAAACACTGCGCAAACATCACAGATGCTCTGTGCAGCAAAGCCTGTGCCAACTATACAGCAAACCTGACCGCAGATCCCACACAAATAAACTGGTGAGAGATGTTTCAGCTTCTGACTGAGCAATTCCATGCAAATGTCAATCTTGCAATGACAAAAATAAAGTTTTCACCAAGATAGCAAAAGTTTTTTTTTGTGTGTGTAAGCAAGTGTTTTACCGTATTTTAAAATACTCAAAATTGTCTCTTTTAATGTTTCCAATGATTGTATTTAATTTAACAAAGTCACACAAGTGGCAATTCATTCAATTCAATTCACCTTTATTTGTATTGCGCTTTTACAATGTAAATTGCGTCAAAGCAGCTTCACATAGAAGATTATAGTAAATTGAAACAGTGTAGTTCAGTATTTAGAGTTTAAGTTCAGGTCAGTTTAGCTCAGTTCAGTGTGGTTTATTAATCAGTACTGATAGTCCAAGCACTGAAGAGCAAATCCATCAATGCACAGCTCTACAGATCCCCAACCTTGCAAGTCAGTGGCGACAGCGGTGAGGAAAAACCTTACCAATTGGCGAAAGTGAAGAATTTTAAAACATCGAGAGAAACCAGACTCGGTTGGGCACGACCATTTCTCCTCTGGCCAAACGTCTTGTGTAGAGCTGCAGTCAAGGCACCGGAGGCTGGAGGATGCTGGACCTCAGTGAAGATTCGTCTGTCCATGGAGCGTCACAGGAATCAGTCTCATGCTCTCCACTCCTCAATGACCACCACAGCAGCTGTTTGGGATATGGCCTGGTCCAGGATTATGGGAACCTTGGGTTCATCACATCACTGGGCTTGGATCAAATCAGTGGTGCTGCATAATCTGAGGGCCTCGGGATGAGTATAAAGAGAATAATTAGTGTAGCTGCTGTTCATAGTGTATATAAACTAGATGAAGAAACCTGTGTGGAGCACATTCATGTATCACACCGTTAAGTGATGCCCTGATTGTATGCTTTACTAAAAAGATAGGTCTTTAATCTAGTTTTGAACAGCGAGAGTGTGTCTGAGCCTCGGACATTATCAGGAAGGCTATTCCTGAGTTTAGGAGCCATAAATGAGAAGGCTCGACCTCCTTTACTAGACTTTGCTATTCTAGGTACTACCAGAAGCCCTGAGTTTTGAGATCTTAAAGAGCGGGTTGGATTGTAGCGAGACAGAAGGTTGGTTAGATAAACAGGATTTAGATTATTTAAAGCTTTACATTTACATTTAGTCATTTATACTTTACTGTCCTAATTAAATAATTCAAAATCAAGGCATGATCATATTTTATTCTGGTAAAATAAGCGTAATCTGGAGGCCTTTTCCTTTCATATAAGCCACTTCTGATACAAATGATCAACTAGTAGTCAAGTTATTCTTTGTTTCTCCTAAAACTTGGATAGGCTACAAGTCTGTTGTCATGTCGTGTATACTGCAAACTCACATACTTTTTAGGTCACATCCATACTCATGTTTATTTTCCTCATTTAAAATCTAAATAAAATACATTTTTCTGATCTCGTAACTCTGTGGTGAGTTGTTTTGGAAAATATAAACAGATGTTTCAGTATAACATACAGTATACTTTCTCTTTGAGAAAGATTTATAGCAGATATCACACCCATAATGCTGGAATTGCTCATAGCAAACTTATTATTAACTAATTCAAATGTTTTTTTTTTTTGTATTTTTTTTTTGTATATATTTTCACTACTCTGTGTTTTTCTGATTTGAAG
Seq C2 exon
GGAGTTAATATTTTGGGTGAATAGAAGAGTTCCTGTATGGGCGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868:ENSDART00000161567:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]