GgaINT0123755 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8920819-8921365:-
Coord C1 exon
chr17:8921309-8921365
Coord A exon
chr17:8920868-8921308
Coord C2 exon
chr17:8920819-8920867
Length
441 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TCATGGGATGTTCTTTGCAGGTC
3' ss Score
7.76
Exon sequences
Seq C1 exon
CTGGGAATGCGAGAAGCAGAACTACACGCTCTTCAATCAGTCCACAAAGATCAACTG
Seq A exon
GTGAGCGGTGGGAGGCTCTTAGTGTGGGGCCCAGCTCTGCCTGGTGGTGGGGATGGGGTGATGGGCACTGAGTATTCAGTGGTGAACTGGAGCTGCTGGGTGGGATGGGAGCTGGGCTGGTGTCCTGTGGGTGTTTATGGGGACATGCATCCACTTGCCCCTCTTGTGCACAGTTTGAGAACTACAATTGTCCCATCACTGCCCCTTGAGATGTGGGATGAGCCAAAAAGAGACCTTCCCAGCCCCAGCCTTCATTCTGTGGGGCTCCCATCCACCTCTGTGAGCACTGGGGATGGTTGGAGACGGTTTCAGGCTTTGCATGGGGCAATGCCAGAAGCAACTCTGCCATGGAAGGGACATTAGAGGTGGCCTCAGGCTGGTGGGTCAGCAGGAAGGAAAGGAGCTGCTGTAGTTTGGATCCTCATGGGATGTTCTTTGCAG
Seq C2 exon
GTCACACATCTTCTGGGTGGACAGAAAGCTGCCGCTGTGGGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]