BtaINT0081016 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59675156-59675728:+
Coord C1 exon
chr8:59675156-59675316
Coord A exon
chr8:59675317-59675632
Coord C2 exon
chr8:59675633-59675728
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCAC
5' ss Score
-0.49
3' ss Seq
CATGTCTTTGTACCCAACAGTGT
3' ss Score
7.06
Exon sequences
Seq C1 exon
AACTCTCTGTTAAGGCTTCTAACAGTCAAGGAGCGGGAGCGAGCCCGAGCCACCTTCCTGGCCCGGGGCAGCGGGAGCACGATCAGCGAGGCTGAATGCCACCGTGCCCAGCACTCTTGGTTCTGCAAACGCCCCATTGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
GTCCACTCCCTACCAATCCCTGCCCCCACTCACCTACCCTCCTCCTTTGTCCCTTGGTATGAAAGGTACCTGCCTCCCTGTTTCTTCTGCCCTTTCGTCCAATAGCCAGGAGAGGATCCTTCTGTGAATTAGATAGTGGCCGTGACTCCTACTGGCCAAGGCATAGTTCAGCGTTGACTCCAAACTCTGTCACCCATGTCAGAAAAGCCTGGATGTACATATCCAGGGGTTCACCAGAGCTTTGGATTTACCAGAATATGGGAAGGGCAGACCTTTCACAGTCCCACTTCTAACCACATGTCTTTGTACCCAACAG
Seq C2 exon
TGTCAGCCATGTGGGTCCCATAGCAGACAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGGCCCCACTGCCCACAGAGCCTGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809:ENSBTAT00000017015:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTTAAGGCTTCTAACAGTCA
R:
CTGGACTCAGGCTCTGTGGG
Band lengths:
254-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]