GgaINT0063026 @ galGal3
Intron Retention
Gene
ENSGALG00000001900 | KIAA1045
Description
NA
Coordinates
chrZ:7895934-7896342:+
Coord C1 exon
chrZ:7895934-7896100
Coord A exon
chrZ:7896101-7896240
Coord C2 exon
chrZ:7896241-7896342
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GGCACTCTGTCACCCTGCAGCAT
3' ss Score
7.57
Exon sequences
Seq C1 exon
AACTCCCTGCTGCGGCTGCTGACAGTCAAGGAGCGGGAGCGGGCACGCGCCACCTTCCTGGCCCTGGACCAGGATGGCAGTGGCTTCATCGGGGAGGGTGAGTGCCACAAGGCCCAGCACGCCTGGTTCCGCAAGCACCAAAAGGAGACACCATCCTGCAATGTCAG
Seq A exon
GTATGGACGGGACTCTGGGACGGGCTGAGGAGCCCTCTCCTTTCCTCCTCCATGGCTGCAGCCCTTCCCCCACACTGCACACCCTCTCCCTGCCAGACCCTGCCTGTGGCAGGGCTGAGTGGCACTCTGTCACCCTGCAG
Seq C2 exon
CATCAGCCATGTTGGGCCCATGTCAGAGAGCAGCCCGGCCAGCAGCGGCAGTGTCAAGAGCCAGGAGAAGACACTGCTGGCGTCGGAGCAGGAGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900:ENSGALT00000002939:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=WD(100=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACAGTCAAGGAGCG
R:
CTGGCCTCCTCCTGCTCC
Band lengths:
254-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]