RnoINT0110445 @ rn6
Intron Retention
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58381877-58382455:+
Coord C1 exon
chr5:58381877-58382037
Coord A exon
chr5:58382038-58382359
Coord C2 exon
chr5:58382360-58382455
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CACGCTCTTGTGCCTGGCAGCAT
3' ss Score
7.45
Exon sequences
Seq C1 exon
AACTCTCTACTGAGGCTTCTCACCGTCAAGGAGAGGGAGCGAGCTCGAGCCACCTTCCTGGCACGGGGCAGAGGGAGCACCATCAGCGAAGCAGAGTGCCACCAAGCCCGACACTCTTGGTTCTGCAAGCGCCTTGCAGAGGCTCCTTCCTGCAGCGTCAG
Seq A exon
GTCTGCCCTTTATCAGCTCTGCCCCGCTTAGCCCCCTCTTTCTCAGCCCCTCCTTCCTAGCCCCCCTCTTCCTCCTTCTACCCGGATTTGCTTGGTTTAGCACAAGCTTCTTTCCATCCTATTGGCAGAAGATCTGCCTGAGAACTAGGCAGAGGACAGCAATCCTATTGGCACCATGTGGGACTGCCTCTGTCCTAAATTCTCTGCTGCCCATTTCAGAAAGACTGGTCAGGCACGGCTAGGTCCACGGGTTCACTGGAGTTTGGGAGGAGTCGGGGCTATCGCTGCCCCACAGCTGACCTCACGCTCTTGTGCCTGGCAG
Seq C2 exon
CATCAGCCATGTGGGTCCTATAGCAGACAGCAGCCCGGCCGGCAGCAGTAGCCAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129:ENSRNOT00000000141:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTACTGAGGCTTCTCACCG
R:
CTGGACTCCTGCTCTGTGGG
Band lengths:
254-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]