HsaINT0086391 @ hg38
Intron Retention
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34977083-34977641:+
Coord C1 exon
chr9:34977083-34977243
Coord A exon
chr9:34977244-34977545
Coord C2 exon
chr9:34977546-34977641
Length
302 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CGTGTCCTCATGCCCAGCAGCAT
3' ss Score
4.24
Exon sequences
Seq C1 exon
AACTCTCTGTTGAGGCTTCTGACAGTGAAGGAGCGGGAGCGAGCCCGAGCCGCCTTCCTGGCTCGGGGCAGTGGGAGCACCGTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTGGTTTTGCAAACGGTTCCCAGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
GTCTGCTCCTTACCAGTCCTGGTCCCCACTCAGCCTCTCCTCCTCCCTTTTCCATGCCAGTGGCCCTTCCATACCTCCCTGCTCCCCCTGCCAACAGCCGAGAGAGGAGCCTCCTGTGCATTAGGTAGAGGATGGTGATGCCTACGGGCCAGGGCATAGGACAGCCTCTGCCTTCAACTCGGTGTTGCCACATGTCAGAAGAGCCTGGATGAGCATGTCCAGAGCCTTGGGCTTACCAGAGTTTGGGAGGGGGCAGGCATTTCACTATCCCACTCCTAACCACGTGTCCTCATGCCCAGCAG
Seq C2 exon
CATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGACCCTGCTGCCCACAGAGCAGGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733:ENST00000242315:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTTGAGGCTTCTGACAGT
R:
CTGGACTCCTGCTCTGTGGG
Band lengths:
254-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development