BtaINT0081017 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59675633-59676238:+
Coord C1 exon
chr8:59675633-59675728
Coord A exon
chr8:59675729-59676044
Coord C2 exon
chr8:59676045-59676238
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTCTTTGCTTCCACTCCAGATT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TGTCAGCCATGTGGGTCCCATAGCAGACAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGGCCCCACTGCCCACAGAGCCTGAGTCCAG
Seq A exon
GTGAGTGACACCTCCTTACCTGGCTGTCTATACCCTGACCCCCACACACACAAGTAAGATTGAGCATTACCCACCATCACCCCAAAACAACAAATGCCCACCCCAGAAACCAGACTTCAAGAGTGTGCATTTGACCCCAGATCCATAGGGCTAGAGGGCTGTCAGCCTGGAAGCACAGTCTGCCAGCACCACGTCAGACACAAGCCAGGACTGCCCTGAGTTTTGCCCAGCTCAAGCCATGCTGTGGGGATCAGGTCTCCTGAGCCTCCAGACTCAGCAACCAGCCTCACAAATCTGTTCTTTGCTTCCACTCCAG
Seq C2 exon
ATTCGTGGATTGGCCTACCTTCCTGCAGGAGAGTGTCATCTACATCTTGGCTGCTCGCCCCAACAGTTTGGCCATTCACCTGAAACCCCCAGGATAGCATGGAGCAGAAAAGCTCAGTTTGGGGACAGTGGCATTCTCTCCCTCCTTTCATTTCTCCCTTTCCCCACTAACCTCTGGTACTGAGACTTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809:ENSBTAT00000017015:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCATGTGGGTCCCATAG
R:
CCCCAGAAGTCTCAGTACCAGA
Band lengths:
288-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]