HsaINT0086392 @ hg38
Intron Retention
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34977546-34982544:+
Coord C1 exon
chr9:34977546-34977641
Coord A exon
chr9:34977642-34978014
Coord C2 exon
chr9:34978015-34982544
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTCTTTGCTTCCACTCCAGATT
3' ss Score
7.64
Exon sequences
Seq C1 exon
CATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGACCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq A exon
GTGAGTAGGACCTCCTCACCTGGCCATTTGTACCCTCTGAACCCCCACAAAACACACAAGTAAGAGAGGGCATTACCCACTCCCACTCCAAAACAGCAAGCGCCCACCCAAGAAACCAGGCTCCAAGAGTGCACATTTGACCCAAGTCTATAGGACCAGCCAGCTGGTCTGTTGGCCTGGTAGCACAGCCAGCCATAGCCAGGTCAGGCATGAGCCAAGCTTCCCTGAGTTTTGTGTAGCTCAAGCCATGCTGCCCCTGGGATCAGGGCTCACGCGTCTTCAAACCAGCCTCCTCAAGCCATGCTGCCCCTGGGATCAGGGCTCACGTGTCTTCAAACCAGCCTCACGACTCTGTTCTTTGCTTCCACTCCAG
Seq C2 exon
ATTTGTGGACTGGCCTACCTTCCTGCAAGAGAATGTCCTCTACATCCTGGCTGCTCGCCCCAACAGCGCAGCCATTCACCTGAAGCCCCCAGGATAGCATGGAGCAGAGAAGCTCGGTTTGAGGACAGTGACATCCTCTCCCTCCTTTCCTTTCTCCCTTCCCCCACCAACCTCTGGCACAGAGACTCATGGGGTTGGGACACTGCCAGCGTCTTAACTTGTCACTAAGCTTTAAGGCACTGAAATCACCATTCCCCTCACAATAGAGGCAGTGAATGCATTGCCACAAGGAGAAGCCCTGGGAGCTGTGGCAGCATCCTCTCCTGGACCGCCCCTGCCCCACATCATAGACGGGACCTGCCACCACACTTATATACATGTGCACATGCTGCCCAGCTGTCCATGCCTTCAGAAGCCTGGTTCTTTTTGGTTGAGAAAGGACCAAAGTCCCTTTGTGAAGCCCCTGGTATAGAGGAGGGGGTCTCTACTCACCCCTTCTATAGGCAGGCCAGTTCTAATTTCCAATAGATAAGTCTCTGGCCAAGTGATTCTTAGGAAGGGGGCATGTCAGACTCGCATGCCTGCCTAGAGCTCCTGGAGATCCTAATGGGCCCCGCTTTCTCCACCAAAAATCCCTTCTGCAGTCAGCTGCTGTTACTAGTAGGTGTGCATTATGTACCTCGGCTGTACTGAGTTGGGAAAAGAGTTAAACATCACCACTGAAATTCAGCCCTTTATTTATTTAAATTCCAATTCCTGGTGACAGAAAAGGCAACTAGCCTGGAGAATCCTGACTGGAAGAGGGGGAGGCAGCCCTTCCCAGGGACTCGGGATTCTAGGAACCTCTCAGTCAGGTCACCTGAGTCCAAAAGTCTTTAGCAGGGTAGTCAAAAATCAAGGTGAGCCTTCTTGGCCCCATTTTTCAGATGGTAGCTCATGGCCTAGGGCCAAGGGGGCCTGAATGGAGCAAACACACTGGCAGGAGCCACAGCCCTCTGTGTTAGATGCTTCACCCAAGTCACCGACCACAGAGACTGACGAGAGCACACTCTGGAGGAAGAGGAGAGAACGGGGCTCTGCTTCCTCATCATTCCAGCTCAACTCAACTGTAGACACCTTCCACAGCCCAAGAAAGATCTGCAGAGCCCTGAGCAGGGACTCTTTCAGCCATCCTGACAAACAGGATAAGAGGCTGGGGCTTAAGAAGAGGCTCTGCAGAGAAGGTCCTGGGAAAGCCTTACAGAAGAAGTTTTCCGCTTCTCCCTATCACTGAGACTCGGCTTGAGTGGCTGCTTCTCCTCACTGCTCATCACATGTCCTTCCCCAGCAGGCTAGGGCTTGGGCCTGGCATGGAAGGCCTTTTGGGGCAATCAGAGGCTGCCACAAGAGCACCAAGCCTGGCCTCCAAGCCCCAGCCCTCCTTCCTAAGTACTCATCAAATTCAAATTCTTCAGTCCGTGTGTTATGGCTCATCTTGGCCGGCCGTGGGGTCCATGTTCTAGGCTTCTGTTTCCAACTTAATGACTTAGGCATAGCGAGATCTGACTACCAAGAGTTATTCAAAAGGGAGTGGAGTGCAGTCATGCAGAAGCAAACACGTCTTCATTGCTCGAGGCCCTTGTGCTAAATCGGGTGCGTACAGAAGAACACACACCGCTCGGTGCTGAATGTTTCGAGGAAAGCAAGGAGCTGCGGCCAGGGGCTTCTTGAGAGCCCTGTGTAGTCTCCTCCTGTAGGAACCACCTTAGCTGGAAGCAGGGTGGTGAGCTGCTGGGGTTGGATTATTTGGGACTGAAATGAAGCAGACAGGAGACAAATCTGGGCTCAGGTGTATGGCCCACAGCTTTTAGAAATGCTCTTCAGCCGTCCCCCAGGATTGATCCATAGGAGGGGCCATTATTCAGTCTAGTCAAAACAAGAAAGCGCAGGACTCCTGGGCCTAAGAACTGCATCTGAAGCAGCCAGGCCTGGGGTTTTGCACTGAGATGAAAGCACATTAAGCACAGGGGCTCTTACCTACTCTCCTGGCAAATCATCTCCTGTGCCACTGGCCTTGGGCTGCTCGATCTCACAGACGGGGCATTTTGAGTAGAGACAAGCTCTGGGCTTTGAGAGCTGAATAGCATTTTTCTCCTGCCTCATCAGTCACAGGGACTGGAAGTCCATCTTGTTCCCTGATCCTTCACAGATCAAGGTGATGCCTACCTCTTTGGAGCTGCTGCCTCTAGCTCTCCACGGGTGAGTGAGGAGAGTTGGTGGGCCAGGTCAGGCCTGCCGTATTCCAGGGCCTGGCAAAGCAGCCCCAGAGTTCTTCCACAACAGGAACAGGCCCATTTGGATCACGCTTCTCCCTATTCCAGAACAGCAAACTTCCTGGGTGAGGGCCTGCTACAGAGATCCCAGGGGACACTTCCCTCAGCAAAGAGTAGAGTTCCCATCCCACAAGAGTCCTAGGAAGCAGGAAAGCACGAAGGAGCAGCCAGCCTCTTCTCCACAGGCAGTCATCTAGCTTTTTACCAAAGGGGAAGTGCCGTTGCTCCCCAAGTCCAGAGTTGCAGACGCCCTGCCCCAACCCCCGTCCAGAATCTCCCTTTGCAGTGTTCTAATCCCCAGAGCCCCTCTGCGGTATGTATAGAGTTGTTAAAAACGTTCAGAAACCCAGTGAAGCCCATTTCGTTTTCAAGCCCTCCCATCACTGTGACTCTGAAATTCTGCCAAGTACAAATATTAGCGTTTGGCTCTAATAAGGGTATGAGAAAATGTTTCAGTCTTTTCTTTGTGGCTACCCAAAATTGAGATCAGTGTTTCTAACCAAGGAAGGCCTGGGTTATAGACAGGCTCCTCTGAAGCCCACTTGCCCTAAGCATTTTTCACCTAGCATTCCTCTTCCTCATGTTCAGATGTGAATGAAGGGGCAGCTGGAGGATGTGGTGGAGCTGCAGGGACCGAGGGTCAGCTGAGCAGTGGCCCTGGCCACAAAACCACTCCAAGTCTGCTCCTTGGCTTCCTCTCCTGAGCCCAGCCTTCCCCAACAGAACACTTGAGCAAGGGCCCCTAGAGTATCCCAGGGATGGAGCAGTCCCCTCACTCTAGGTACTGATCTAACCTTCAAGTGCTCCTCTTCATTTGAGGACACCTACAGTAGAAACCATGAGGACATTGCCTCTTTCTGCCCTCAGCCCAAGTACCTGGGGCTAGCAGGGCAGATACCAGCCTTTCTGGTCCTGCTGCTCCCTATGGGATGTCACCCTGACCTTGCTTAAGTGGCCAAGTCTTAGGGTCCCCTTATTCCTGTCACCATTATGAAAAACACAGCATTAAACTGCCTGGGAAGAGGACACCTCCTTGGGGGAGTGAGCCCCAAGGTTATACCCAGGACTCATAGCCCAAAGCACAACCTCGGCCATTGCAGGTTTCACAGCTTCAGTCAGAGTGGTGCCAGGAAGCCCAAAAGCCAAGAGGGAAGGTCAGCAGAAGCTGCCTGGCAAGGCCCCAGGCCAGCCAGGCCCACCCCAGAGCCAAGAGAAACTTCAAGCAGGACTGAGAACTGGTAGCTGGCTCTAGTGATCCTGAAAGCATGTTCCCTTCAGACCAGCAGAGTGAAGACAGACAGATGTGTGGCCCTAAAAGGCAGAACAGTTTTGATGCCAGAACTTCAGGACTGTCACCACAGTCCCTTTTTACCCCTCCTCTATTTACAGTGAAATAAAATTCCTATTTTCTTTTTTTTTTTTTTTTAATTTTCCTTATTTCAAGCTCTTATCTGAAAAAATGCTACTTTCTCCTACCACTTAGTTTGAATTTGCCCAGGATATCTGTCTGGGCCCCTGGCTGCAACCCAGACAATGGCGAGATCTCCTGGAGTGGGGGATATTCACGCATCGTGCCTGTTCCTGACAGCTCAGCCCTGGTGTAGGGTGGGACTGGGCATTTTCTCTGCTGTTACTTTTCTGCTACCACTATTTTTGGCAACCTTGGAAAGAAAATAAACAGGTTACAGAATTTCGGCTAGCACTAAGGGAAAGCTTTTTCCTCTGGGCCACATGCCCCAGTGACCCAGAGCATGGAAAGGGGGTCAGCTCTGGTCTGGGCCAGTGACTAAGAAGCCCAATCACATTCCAGTTTCTATAGCACTGGGTAGGCACAACCCACAGTTAAGAACATCAAGTTATAAGTAGCCAGGCCTTTTCATAGCCATGGTGACACAAAGGCCCTCAAGATTAGCCTCCTGCCATCATGGGTTGGCCTGTGATCTGTCCCCCAGCCAAACCCAAGTTTGTGAGAGGGACTCTGAGAACACTTGAGCAACACTTGGGAATCCAATGCGCTCTGGTCCCTCATGCCCTTCCCATGTGCTTTTCTGCAGAAGGTAACTTGACAGCAAGCTGAGGGGAACGTCCCCAAGCCCTGTCTCCCTGTCTCTACAGCTGCATGCTCCTCTGCGTGGCCCAGCCTTCACAGCGCTCCAGAAGAAGCTGATGCCCTGAGGCTGGGCACAGTGGAAATCATAATAAAGCGATTGCGATGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733:ENST00000242315:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGTCAGGACAAGACCC
R:
GCTTCTCCTTGTGGCAATGCA
Band lengths:
343-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development