GgaINT0063027 @ galGal4
Intron Retention
Gene
ENSGALG00000001900 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chrZ:8367169-8368975:+
Coord C1 exon
chrZ:8367169-8367270
Coord A exon
chrZ:8367271-8367382
Coord C2 exon
chrZ:8367383-8368975
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACAGCATTTGCCCCACAGGCC
3' ss Score
7.29
Exon sequences
Seq C1 exon
CATCAGCCATGTTGGGCCCATGTCAGAGAGCAGCCCGGCCAGCAGCGGCAGTGTCAAGAGCCAGGAGAAGACACTGCTGGCGTCGGAGCAGGAGGAGGCCAG
Seq A exon
GTGAGGGGCCGCCCTGGGACGGGGGGCACGCCATCTTGAAGGGCGAGCACTGGGGAGGTCACTCTGAAGCTGTCCCCCCGGGGGCTGTGAGGTGACAGCATTTGCCCCACAG
Seq C2 exon
GCCCATCGACTGGCCCAGATTCCTGAGGGAGAATGTCGCCTACATCCTGGCAGCCCGTCCCAACAGTGCCGCCATCCACCTGCAGCCGCTGGCCTAGTTCCCGGCCTACCCACCCCGGCGCCATCTTGGTTGGCGAGGCCTCCCCTGCCGCCCTGCAGAGAGCCCCGTTGCCATGGCGACCGGACCCGCACCCCATTGGCTGAGGGAAGTACCTCCCCCTTTGCTCCACCTGCCAACCCCACGCAGCTCTCCACCCTCTGCCAGTGGGGAGCCAGCAGCTGATTGGCTGTTGGGAAAGCAGCAGCTCCCCCTTTCCCCTTGCCTCAGTGTTGGATTTGCTGGGTGACGCCCGAGGGGGGTGGGTGCGGGCTGTGATTACCACAGCAGGTCCTGCCTTGGATGCAGCGCTCTGATTGGCTGGGGGATGCCTCTGGTGCCCTGGAGGCCCTGCAGTGGGGAGGCCCTGGAGGCCGTGGGGCAGAGGAGGGCTCTACCGCAACAAGGCTGTCCCCACCCCGCAGCGCTGACATCCCTGGGTCCCCCTCGGGGCAGCACTGCAGGCTGGCAGCCACCCACAGCCCAGAACTGTGGCTGGAGGATAGGAAAGGTCCTCCAGGGTCCTTCCTCGAGCCCCAGGAATAAGGGTGGGGGTGCGGCAGTACACCACAAGGCAGTAGGGCAGGCTCGACCCGGGGCCCCTCGCAGACCTTGCCCCATGCACTCTGGGGTTGAGGTCTGGTTGCTCCCACCTGGCAAGGCCTTCCCACCACCTCCTCAGCCTGGGCAATGGAGACACCATCCCGCTTGGCTCCCCCTCCCCAAAACAGGGCACTGCTCACCCCTTTAGGGCCTCCCTACCCCCTTCAGGCATTCCCTTTCCCCTTCAGGAACTCCCTCCCTCGCAAGCTGTGAGACAATCACAGAGATTCAGGCCATACGTGAGGCCGGGAGATGTGCCAGTGCAACACTTCAGGTGCTGGGTCTGAGGTGGGGCATTGGCTGGCTGGAACATGACTGGAGCGAGCAGGCAGCTGGGGATATAAGGTGTTGCAGCCTCCGCTCTGTACTGGGAAGTATCCATTAAACAGCTGTGTCCAACCAACCTCTGGCTGCTGATTATACGAGCCACGTGCCGCAGATGCCATACAGCAACCTCCTGGCTTGTCCCAGGGGGACTTAGGGGGATCCCACTGCTTCCTGCTGTGTTGAACAGCCTGCCCTGGGCTTGGGTCCTTGTCCCATCAGGCGGGCTGTTCCTCGCATCCCCAAAAGTCCTGCAGCAATGATGGGTGGAGAAGCTTGTGCCTGGAGACATCTGCTCCTGTCCTTCTCTCCCAGCTGCAATCCCAGCCCGGCGCAGGAGGAAAGCTCACGCATCGGTACAAAGCTGCTCATTGTCCACAGGGGTGCTGGAGGCTGTGAGCAGGCAGACAAAGAGCCCTGGGCAATGGTGGAGGCTGGGCAAGGGGAACAAGCTGCTTGCAGCTGCGCTGGGAAACTCCAAATAACCAAGGGCCCTCTGGAGGTGTTTTAAGAGTGGTGCTCATGGCTGGAGGCTTCTCCAGTACTAGGCATATCCCCGCAGCACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900:ENSGALT00000002939:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGGAGAAGACACTGCT
R:
GTACTTCCCTCAGCCAATGGG
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]