RnoINT0110446 @ rn6
Intron Retention
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58382360-58383070:+
Coord C1 exon
chr5:58382360-58382455
Coord A exon
chr5:58382456-58382775
Coord C2 exon
chr5:58382776-58383070
Length
320 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCGTTCTCTCCCTCTGCAGATT
3' ss Score
13.87
Exon sequences
Seq C1 exon
CATCAGCCATGTGGGTCCTATAGCAGACAGCAGCCCGGCCGGCAGCAGTAGCCAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq A exon
GTGAGTTGAGCCTCCTCTTTGCTGTCTATGGCTTCCACTGCCATGACACCCACATAAGTAAAGGAAGGCATTACCACTTCCACCCCAGAATAGCAAATGCTCACCCTGGAAACCCAGGCTCCAGGAGGACACATTTGACCCCGGGTCTCTAGGGCAAACCAGTGACCAGGGCTTTGTAGTGGAGCCAGTCCTAATCATGTTAGTAAGGAGGCAAGCTCCCCGAGTTTTGTCTGCTCTGAGGCAAACTGCCACTGGGGTTGAGCCTTATGGGCCTTCAGGATCTGTGCCCAGGCTTGCAAACCCGTTCTCTCCCTCTGCAG
Seq C2 exon
ATTTGTGGATTGGCCCACCTTCCTGAGAGAGAATGTCATCTACATCTTGGCTGCTCGTCCTAACAGTGGAGCGATTCACCTGAAGCCCCCAGGATAGGTGGGACAGAGAAGCTCAGTTCTGGGACGGTGGCATCCTCTCTCTCCTTTCCTTTCTTTTTCCTTTACCAACCTCTGGCACTGAGACTCATGGGAATGGGACACTGCCAACATCTTAATTTGTTATTAAGCTTTATGGCACGGAAGCCACCGTTCCCCTCACAACAGAGGCAGTATGTGTGTTGCCACACTGAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129:ENSRNOT00000000141:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGTGGGTCCTATAGCA
R:
CTCTGTTGTGAGGGGAACGGT
Band lengths:
358-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]