BtaINT0082125 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021336 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
Coordinates
chr5:56233023-56233588:-
Coord C1 exon
chr5:56233561-56233588
Coord A exon
chr5:56233102-56233560
Coord C2 exon
chr5:56233023-56233101
Length
459 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGC
5' ss Score
7.84
3' ss Seq
TGTTGGGTCTCTTCTTCCAGGAG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GAAATGCCACAGATATCAATGACAATAG
Seq A exon
GTACGCCAGTCCCCACTGCTCTTGGGCTCTCTGGGTGAGAACAGAAGAAATGGTTACCTTTCCCTTGTGCCCAATTTAGGGGTTCCCCAGAGCCTTTGGGGAGAGGAGGAGGAAATGAGAGCCACTCTCACCATCACCATGTTGTCCAGGAGATCCAGTCACTCCCCTGCCTCTGTGTAGAGCACTGTCCCCTCCTCCAGTCTGCCCTGTGGCTCCGCGCCATTGCAGCTGTGGGGGCAGGGGGAAAACCGCCATGGACGTCTGATGACCTGGGTTTCTCTCCTGTGTTGGGGAACTTTGTGACCTTGGGCAGATCAGCTCCATCTCTCTGGCCTTGATTTGCCCAGTGTTGCTGTCCTTGGTTATCTCACAGGCATGCTGAGAGAGCAAAGTGACAGGAATGCTGTCCTTTCTACGGGAGCTGACAACGCTGTGATTGTGTTGGGTCTCTTCTTCCAG
Seq C2 exon
GAGTGACCTGCCATGCGGCTACGAGGCTGAGGACCAGGCCAAGCTGTTCCCTCTCCACCAAGAGACGGCAGCCAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021336:ENSBTAT00000028441:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]