RnoINT0079498 @ rn6
Intron Retention
Gene
ENSRNOG00000005299 | Kif5a
Description
kinesin family member 5A [Source:RGD Symbol;Acc:1303035]
Coordinates
chr7:70520452-70520906:-
Coord C1 exon
chr7:70520879-70520906
Coord A exon
chr7:70520564-70520878
Coord C2 exon
chr7:70520452-70520563
Length
315 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TAGAATGTTTCTTCCTCCAGGAG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GAAACGCCACAGATATCAACGACAACAG
Seq A exon
GTACTCAGACTCCACTAGCCTTGGGTTCTCTAGGTGGGACTAGAGGGAAAAGCGAGTAATACTGCTCTCTCTGTGTGGACTTCCCTGGAGCTTTGGCGGGGGAGGGAGGAAATGAGGCAGGAGATCCAGGCATTCCCGGGGATATCTGATACTTTCTCCCTACTTTAGGGAACGTTCTGACCTTGGACAAGGCCTCGAGTTTCCTTAGGAAGCGAGCATCTTCCCTGCCCTTGCCCTTCAGTATCTCTCAGGCACACTGTCAGAGCACTGACCATGGCAGGAGCAGAGCTCATGATAGAATGTTTCTTCCTCCAG
Seq C2 exon
GAGTGACCTGCCCTGCGGCTATGAGGCTGAGGACCCAGCCAAGCTTTTCCCTCTCCACCAAGAGACGGCAGCCAGCTAACTCCCAATCCTGGCTGCATATCTGCACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005299:ENSRNOT00000007721:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]