MmuINT0087299 @ mm10
Intron Retention
Gene
ENSMUSG00000074657 | Kif5a
Description
kinesin family member 5A [Source:MGI Symbol;Acc:MGI:109564]
Coordinates
chr10:127229745-127230176:-
Coord C1 exon
chr10:127230149-127230176
Coord A exon
chr10:127229857-127230148
Coord C2 exon
chr10:127229745-127229856
Length
292 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
CAGGCTGTTTCTTCCTCCAGGAG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAAATGCCACAGATATCAACGACAACAG
Seq A exon
GTACTCAGACTTGGGGTCTCTGGGCGGGACCCAAAAAAATCGAATAACACTTCTCTAAGAGGACTTCCCTGGAGCTCTGGGGAGGAGGGAAGAAATGAGGCAGGAGATCCAGGCACTCCCATGGGTACTTTCTCCGTACCTCAGGGAACGTTCCGACCTTGGGCAAGGCCTGAGGTTCCTTAGGAAGCCTGCATCCTTCCTGCCCTCACCCGCCCTTCAGTATCTCAGGCACGCTGTCAGAGTGCTGGCCGCAGTGGGGGCAGAGCTGTTGACAGGCTGTTTCTTCCTCCAG
Seq C2 exon
GAGTGACCTGCCGTGTGGCTATGAGGCTGAGGACCAGGCCAAGCTTTTCCCTCTCCACCAAGAGACAGCAGCCAGCTAACTCCCAACCCTGGCCACATATCTGCACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074657:ENSMUST00000099172:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCCACAGATATCAACGACA
R:
CTGAAAGTGCAGATATGTGGCCA
Band lengths:
140-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types