DreINT0086467 @ danRer10
Intron Retention
Gene
ENSDARG00000098936 | kif5aa
Description
kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
Coordinates
chr9:269175-269716:-
Coord C1 exon
chr9:269689-269716
Coord A exon
chr9:269263-269688
Coord C2 exon
chr9:269175-269262
Length
426 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GCTCTGCATCTCTGTTTCAGGAG
3' ss Score
9.9
Exon sequences
Seq C1 exon
GAAACAGCACAGATATTAATGATAACAG
Seq A exon
GTCAGTCAACCCAGACACATCTGAAAAGCTTTCTCCACTCAGACAAGCAGAGTTTTCTGAAGATCATCATGCATGTTTATCCCTGTGATGCTCATTCTGACTGTAGATATTGGACATTTCTATTATTATTTAGAAATGTTGGATCAGAATGTACCTTATTTTTGAATTCATGATATTAATGAACCTGTTTAATATATCTGGATTCAACCTGTCTTCTAAAACACCAGCTGTACACCAGATCTTTATTATAATAAGTTTATACCAAATATACTCTGGCAGACTTTTTTTACTGCATTTTACACGTGTGGTGTACGATGACTTTACCAGTTTCAGATACTTCTCAGTGTGGATGAGAAACTTGGATTCTTGGAAACTGGACACCTTTATTATTGTGTTGCTTTATTGGGCTCTGCATCTCTGTTTCAG
Seq C2 exon
GAGTGATGTTCACTGCGGCAGCATGGTGGACGATGCCTCTCGAGTGTACATCATGCAGCAGGAGACTGCAGCCAGTTAATCATTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098936:ENSDART00000165228:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]