BtaINT0082143 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33656526-33657769:+
Coord C1 exon
chr13:33656526-33656635
Coord A exon
chr13:33656636-33657667
Coord C2 exon
chr13:33657668-33657769
Length
1032 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GGTGTTTTTTATTTTGTCAGCCA
3' ss Score
3.19
Exon sequences
Seq C1 exon
CAAGCTGTTGAACAGCAGATCCAAAGCCATAGAGAAACTCATCAAAAACAAATCAGTAGTTTGAGAGATGAAGTCGAGGCAAAAGAAAAACTTATTACTGATCTTCAAGA
Seq A exon
GTAAGTGTGTTTTCCTTTCTTCTGAGGTAGTAGAAACTAACTTGGAAAGACTTGCCTGTTTAGACAGGAGGACATAAAAGGTCACTGGTGGGTAATATATCCTTATTTCTAATGTTTCTAACCTGCATTTTTCTTTGAAACAATTTTTGACGTGAAAATAAAGAATCTTCATTTGTGAGAACTTCTAGTTCCAGTGGAAGTTTTTGAAAATTTTTCTTAGGTCTTTTGATGTAGATATTCAGTAAAAAAAATATTGCTCAACTTTAACCGTTATTTCAGATACACATCACTGTCTTCTCCAGATCCTTTCCTTAACGTTTTAAAAAAATAATTATTTATTTTAGCCTGCATTGGCTCTTGTTTGGGGCATGCAGGCCTCTCTAATTGTGGTGCATGGCTCTAGGGAGTCTGGGCTCTGTCGTTTGTAGCACTCAGGGTCTCTAGTTGAGGCATGAGAGCTCAGTTGCCCCATAGCATATGGGATCTTAGTTCCCCAACCAAGGATTGAACCCAAGTTCCTGCATTGCAAGGTGGATTCTTAACCACTGGACCACCAGGGAATTCCTGAGAAAAACTATGAAAACTGTGTGTTTTAAAAATGTTTCTTTTAATAGAAGTGGTTGTCTTAGTTTTTCTAGAACATATTTTTCTTACTTCCACAGCCATACACATATAGCATAGAATTGATAGAAATTTGAGGTCTTTGACCAAATCATGATTTGAGTAGGAGGCAGAGGAGAGTAAGAAAAAATGATGACAAAGCTTGGGACATGGAACTTTTTGTTAATGGATTTAGGGAAAGAATTCAGGAGAATGAAACATACGAAATCAAGATACAGTTTTAAACCAAACTGAAAAATACCATATGGCTGAATGTGGCCAGATCCTCTTTCTGCCTCTGTGGACGGCAGCCTAAAGAGGAGGCCTGGTGTATGTGAATGGTGAGACTACAGAATTTAAGACTTTGAAAATTTTTAATTACAGCATTCAGAAAATGATTTTGATCTTGTGAGGTGTTTTTTATTTTGTCAG
Seq C2 exon
CCAAAACCAGAAAATGATGTTAGAGCAAGAACGCCTGAGAGTAGAACATGAAAAGTTGAAAGCTACAGATCAGGAAAAGAGCAGAAAACTACATGAACTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280:ENSBTAT00000033899:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAACAGCAGATCCAAAGCC
R:
GTAAGTTCATGTAGTTTTCTGCTCT
Band lengths:
206-1238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development